| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5338 |
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| Symbol | |
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| ID | 7380697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 339684 |
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| End bp | 340625 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643648958 |
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| Product | transcriptional regulator |
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| Protein accession | YP_002547195 |
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| Protein GI | 222106404 |
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| COG category | [K] Transcription |
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| COG ID | [COG2390] Transcriptional regulator, contains sigma factor-related N-terminal domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.749833 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTCGCAA AGCTGCATTA CGAAGCTGAG ATGTCTCAGG TTGAGATCGC TCGCAAGCTT
GGAATCTCGA CCGCGACCGT CTCTCGTTTG CTTCAACGGG CCAGGGTACT TGGGATCGTC
AAGATCGAGG TGCTTGACCT TGTCTCGCCT GCCGGTCTGA CGCAGGAACT GATCGAAGCG
CTGTCCCTGA AGAGGGCGGC GGTGATCGAT ACGCCATCGA CAGGTATTCT GGGCGCGCTG
GCAAAGCCGT TGGGCGATTT GCTCAAGGAA GAAGGTCTGG CCGCCGGATC GGTCATCGGT
ATCGGTTGGG GTCGTGCCAT ACGTGAGGTT ATTGCCGCAG GCTTGCCGCG TATTCCTGGC
ATTATCGCCG TTGCGTTGAA CGGTGGTCTC CAGCAATCAG CGCCGCATTT CCAGATTAGC
GAATTTGTCC GCCAGGCCGC CGATCAGTTG GGTGGCAGCG CCCATTTTCT ACATGCGCCT
TATCTTTCCT CCGCCGAATT GAAGGATGCC TTTCTTGCTG ATTCATTCGT GCAGGAAACA
ACGAAGCTTT GGGATCGCCT GGATTGCGCG ATTGTCGGCA TAGGGCTGCC GCATGCTATC
AATCCGCCCG AGGCGAGTGC CGCGACAGTG AATGAGCGCG CCATTGGAGG CGCGGTTGGT
GACGTCATCA GGCACTATGT CGATATCAAC GGCAAGCTTT TGTCCTGGGA TGGGGAAGAG
CGAATGATTG CGGCATCCAG CCAGCAGCTT TGCAAAGCCA AACTGTCTAT CGGTGTGGCC
GCGACCGTTG AAAAAGCGGC TGGAATCATC GGCGCTGTTC GCTCCGGAAT GATCAATTCC
CTGGTCACCG ACGCCAATAC CTGCATCGCA ATTCTCAATC TTCTCCAGCA AGATGCGCCT
TCCCAGGGGG CGGAAAAACA AACGAAAGCG AAAAAGAAAT AA
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| Protein sequence | MVAKLHYEAE MSQVEIARKL GISTATVSRL LQRARVLGIV KIEVLDLVSP AGLTQELIEA
LSLKRAAVID TPSTGILGAL AKPLGDLLKE EGLAAGSVIG IGWGRAIREV IAAGLPRIPG
IIAVALNGGL QQSAPHFQIS EFVRQAADQL GGSAHFLHAP YLSSAELKDA FLADSFVQET
TKLWDRLDCA IVGIGLPHAI NPPEASAATV NERAIGGAVG DVIRHYVDIN GKLLSWDGEE
RMIAASSQQL CKAKLSIGVA ATVEKAAGII GAVRSGMINS LVTDANTCIA ILNLLQQDAP
SQGAEKQTKA KKK
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