| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5307 |
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| Symbol | rbsC |
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| ID | 7380671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 308369 |
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| End bp | 309373 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643648933 |
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| Product | ABC transporter membrane spanning protein (ribose) |
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| Protein accession | YP_002547170 |
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| Protein GI | 222106379 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.167667 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCGCA TGACGTCTCA TACCCGTAAA ACTCTTGAAT TCGTCCTCGA CAATCTCGTC
TGGTTCATGC TCATCCTCGT GCTGGCCATG TTCTCAGTGC TGATCCCGAA CTATTTCCAG
ATCGGTATCT TCACCAATAT CATCGAAGCA TCGAGCGTGC TTGGTGTGAT GTCGATTGGT
CTCGCTCTGG TGATCATCAC CGGCCATATG GATCTTTCTG TTGAATCCGT CGCAGCTCTG
TCGGCCATGG CGGTCGGCAT TCTGTTCTGC TCGGCAGGCA TAGGGCTTGG TATCAAGCTT
TCCCCCGAAT GGCTGATGAT ACCCGTCTCG CTGCTGGTGG CTTGCGCCAT CGGTGGGCTG
ATCGGGCTTA TCAACGGCGT TCTCGTCGTC AAACTGAAGA TGAGCGCTTT CATCATCACG
CTCGCCTCCT TTATCTGGGT GCGCGGTATC GTGTTGGCCG TGTCCGGCGG ACGCTCGGCC
CAGGATCTGG CCCCTGCCAT CCGCTGGTTT GCCATCGAAC GCTTTATCGG CATTCCGCTG
ACAGCCTGGA TCGCTATTGC CTGCTTCCTG ATCTTCTCGG TGATGATGGC AAAGACGCCG
TTCGGTCGTC ATCTGGTGAT GATCGGCGGC AATGAGACGG CAACCTTTCG GGCTGGCATT
CGCGTCACCC GCAATCTGAT TATCGCCTTC GTCATGGCCG GTGCCATTGC CGGTCTTGCT
GGCTGGCTGC TGGCCGTTCG CACATCGGGT GCGACCGCCA ATCTCGGTGT TGGCCTGCTG
TTCAATGCTT TTGCAGCGGT GGTGATTGGC GGTGTCAGCC TCAAGGGCGG CGTCGGCGCT
CTGCCGGGCG TCTATGCCGG GGTGCTGCTG CTCTCTTCCA TCAATACAGC CATCAACCTG
ATGGGGCTGC CGGCGAATTA TACCCAGGTC ATTCACGGTT TCCTGGTGCT CGCAGCCGTT
CTTCTCGATA CCTTCAAACA AAGGCTCCGC CAGAGGCTCG CATGA
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| Protein sequence | MRRMTSHTRK TLEFVLDNLV WFMLILVLAM FSVLIPNYFQ IGIFTNIIEA SSVLGVMSIG
LALVIITGHM DLSVESVAAL SAMAVGILFC SAGIGLGIKL SPEWLMIPVS LLVACAIGGL
IGLINGVLVV KLKMSAFIIT LASFIWVRGI VLAVSGGRSA QDLAPAIRWF AIERFIGIPL
TAWIAIACFL IFSVMMAKTP FGRHLVMIGG NETATFRAGI RVTRNLIIAF VMAGAIAGLA
GWLLAVRTSG ATANLGVGLL FNAFAAVVIG GVSLKGGVGA LPGVYAGVLL LSSINTAINL
MGLPANYTQV IHGFLVLAAV LLDTFKQRLR QRLA
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