| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5300 |
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| Symbol | |
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| ID | 7380666 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 303297 |
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| End bp | 304247 |
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| Gene Length | 951 bp |
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| Protein Length | 316 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643648928 |
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| Product | ABC transporter membrane spanning protein (oligopeptide) |
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| Protein accession | YP_002547165 |
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| Protein GI | 222106374 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.340844 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCTCTT ATCTTTTCAA CCGGCTGATG CAGAGCCTTG TTCTGCTGCT GCTCGTTTCG
ATCATCGGAT TTGCCATCCT CAATCTCGCG CCCGGCGGCC CGCTGTCGCA ATATGCGCTG
ACTCCGGGCA TGACGCGCGA GGCAATGGAC CGGATCGCCC ATCAGATGGG CCTCGACCGG
CCATTACCCA TCCAGTATCT CGACTGGGTC TGGCGGCTGC TGCAAGGCGA CTGGGGAAAA
TCCTACCGCG ACCAGCAGCC GGTGCTGTCG ATCATATCAA GCCATTTCTT CGCCACCCTG
CTCTTGATGG GAACATCGAC CGTCATTGCC GTCATTCTCG GTGTCTGGAT CGGCATCAAG
GGCGCCACCC GTCGCTATTC CCTTTTCGAC TATGCGGCAA CTGTCGGCGC CATGGTGGCA
CTGTCCATTC CGACGTTCTG GTTTGGTCTC GTGGCAATCT ATGTTTTCGC GTTGAAGCTG
AAATGGTTGC CAGCCGGTAA TATGTATACG ATCGGCAATG GCTCCTTTTC CGATTATGCC
ATCCATCTGG TCATGCCGAG CCTTGTGCTG GCGCTGGTCG ATATCGCCGT GTGGAGCCGC
TATATGCGGT CTGCCACACT GGAGGTGATC AACCAGGATT TTGTGCGCAC CGCTAAGGCC
AAGGGCGTGT CCCCCCGCCG GGTGCTGATG AAACATGTCG TTGGCAATGC GTTGCTGCCG
ATGATCACGC TTGCCGGTAT GCAGCTTCCC ATCGTGCTCG GCGGCGCGCT TGTGACCGAG
ACGGTGTTTA CCTGGCCGGG TATGGGACGG CTGTTTCTCG ACAGCCTCGG TTATCATGAC
TATCCGGTCG TGATGGGCCT GCTGATGTTT ACAGCCGTCT TCGCACTGAT CGGCAGCCTT
GTCGCCGATC TTCTTGTCGC ATTCGTCGAT CCCCGTATTC GGCTCGGTTG A
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| Protein sequence | MLSYLFNRLM QSLVLLLLVS IIGFAILNLA PGGPLSQYAL TPGMTREAMD RIAHQMGLDR
PLPIQYLDWV WRLLQGDWGK SYRDQQPVLS IISSHFFATL LLMGTSTVIA VILGVWIGIK
GATRRYSLFD YAATVGAMVA LSIPTFWFGL VAIYVFALKL KWLPAGNMYT IGNGSFSDYA
IHLVMPSLVL ALVDIAVWSR YMRSATLEVI NQDFVRTAKA KGVSPRRVLM KHVVGNALLP
MITLAGMQLP IVLGGALVTE TVFTWPGMGR LFLDSLGYHD YPVVMGLLMF TAVFALIGSL
VADLLVAFVD PRIRLG
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