| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5289 |
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| Symbol | |
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| ID | 7380657 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 292179 |
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| End bp | 293732 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643648919 |
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| Product | ABC transporter |
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| Protein accession | YP_002547156 |
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| Protein GI | 222106365 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0912186 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCACA AACCAGACAA ATCCCCGCTT GCCCGCAGCT GCGCAGTCGC GGTGGCGCTT
GCCGCAGCTC TCACCGGGTT TTCAGCCAGC GCTGCCGAGC TGACCGTTGC GCGCTCTGTC
GATGCCGACG GACTCGATCC GCAAAAGGCA AGCACGACAC AGTCCTTGCA GATTACCAAC
CTGATCTTCG ATACCTTGCT GACGATGGCC AAGGACGGCT CCGTCCATCC GGGCCTGGCC
AGTGCCTGGA CGATGGCGCC GGATGGCAAA TCCTATGATT TCACCATCCG CGATGGCATT
AAATGCCACG ATGGCAGCAC CTTCGATGCG GCGGCGGCCA AGGCCAGCCT CGACCGGGCG
CTTGATCCCG CCACCGTCAA TCCGAACCTC TCGGCCTGGG GTCCGATCAC CAAAAGCAGC
GTCGAGGGCA AGGTGCTGAA AGTCACTCTG TCCGAACCCT ATGGTCCCTT CACGTCGTTC
CTCACTAGCA TCCAGGCCGG TTTTATCTGC CCGTCCTCGG CATCTGCCAA GGAATTCAAG
CCGATTGGCA CCGGCCCGTT CAAATTCGTC AACTGGACCC GCAATGACAG CATCCAGCTG
GAGGCGAATG CCGATTACCA GAACGCCAAC CCACTGATCG AAAATCCCGG CAAGCCACAT
ATCGACAAGC TGACCTTTAA GGTCATCCCG GAAGCCGTGG CCAGGATGGC CGCCCTGCGC
TCAGGCGAAG TCGATATGGT CGAGCCGTCT CTGGAAGAAG CCGCCGACCT GAAGGCTGAC
AGCAATTTCA AGGTCTACGC AGCAGACCTG TCCGGCCAGC AAATGCTGGC CGCCTTCACC
TGGAAGATCA AGCCGCTCGA CAATCCAGAT ATCCGCAAGG CGATCGGCAT GGCCATGAAC
CGCGACGCCT ATGCGTCGAT TGCCTTTGAA GGCCTGGTCA ACACCGCCAA TTGCCCTGTG
GCACCGAACC TGTTCTCGAC CGATGAGGCG CTTTGCGCCA GCTGGGGCGT CAAATATGAC
CCCGAAGCCG CCAAGGCTTT GATGGCCAAG GCGGGCTACA CACCGGAAAA GCCGCTGAAG
GTGAAGCTTC TCGTTCACAA GCTGCCGGGC TGGGACCAGA TGCATCAGAT CATGCAACAG
GATCTGGCTG CCATCGGCGT TCAGGCCGAG ATCGAGACCC GCGAAGTGGC CGCTTATTTT
GACTATATGA AGGGCGTCAA CGAACGCACC GATGGCGAAC CTGCCGTCTG GACCATGGGC
ATGTCAGGTG TCGATCCGGA CTACCTCACT TTCCTTTGGA AACGTCCCGG CTTTGTCAAT
ATGGGCATCA ATGCCGACCT CGATGGCATG TTGGACGAGC AGCGCAAGCT TTCAGGTGAT
GCTCGCGCCG CCAAGATCCA TGATATTGAA AAATATCTGA TGGAGAATGC CTATGCGATC
CCGCTGCTGT CACCTGGTTG GGGCTGGCTG ATGGCATCGA CATCGAAAGT CGATGGCTTC
AAGATGGGCT TCATGGTGTC GCTGCTGTTC AACGACGTGA GCGTTAAGCC ATAA
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| Protein sequence | MNHKPDKSPL ARSCAVAVAL AAALTGFSAS AAELTVARSV DADGLDPQKA STTQSLQITN
LIFDTLLTMA KDGSVHPGLA SAWTMAPDGK SYDFTIRDGI KCHDGSTFDA AAAKASLDRA
LDPATVNPNL SAWGPITKSS VEGKVLKVTL SEPYGPFTSF LTSIQAGFIC PSSASAKEFK
PIGTGPFKFV NWTRNDSIQL EANADYQNAN PLIENPGKPH IDKLTFKVIP EAVARMAALR
SGEVDMVEPS LEEAADLKAD SNFKVYAADL SGQQMLAAFT WKIKPLDNPD IRKAIGMAMN
RDAYASIAFE GLVNTANCPV APNLFSTDEA LCASWGVKYD PEAAKALMAK AGYTPEKPLK
VKLLVHKLPG WDQMHQIMQQ DLAAIGVQAE IETREVAAYF DYMKGVNERT DGEPAVWTMG
MSGVDPDYLT FLWKRPGFVN MGINADLDGM LDEQRKLSGD ARAAKIHDIE KYLMENAYAI
PLLSPGWGWL MASTSKVDGF KMGFMVSLLF NDVSVKP
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