Gene Avi_5260 details

Gene Information

• Locus tag: Avi_5260
• ID: 7381381
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 254829
• End bp: 260468
• Gene Length: 5640 bp
• Protein Length: 1879 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643648893
• Product: hypothetical protein
• Protein accession: YP_002547130
• Protein GI: 222106339
• TIGRFAM ID: [TIGR01414] outer membrane autotransporter barrel domain; [TIGR01451] conserved repeat domain

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAATTCG GTAAATCGTT TCGTGTCGCG CATGTTCTGG CAGATCCAAA GACGTTGGCA 
TGGACCCGGC TCAAGCGATC GGCTGGTGCC GCCTTTCGGG CTTTCATTGG CGTCCTCACC 
ATCCTGATTA CCGGCTTGAG TTTTGCGACA ACAGCCAATG CCGCACTTTC AGCGTCATGC 
AGCCAAGTCA ATTCAGACTT CAGTTCGCCA CGCTATCTCA CCAACACCGA CAACTTTTCC 
CCTGATTATC AAAATTTGAC CGCAGGCGAG TATATCTCCT GGAGTTTTTC GACCACTGGA 
ACAGCAGCTG GCGGCACCTC ATCAGCAATT GTGATATACA GCGACAACTA TAATAATCTT 
CTAGTTAATG AGAGTAATCT TGGTGGAAAT ATTAATAAAT CTGGCAATTT TACAGCCAGC 
GCTTCGGTAG ATAATCTACA GATGATCCTT GATGTCACTC AAGATAACTC GGCTAGCCCT 
TCCAACTACA ACACGCTCAC ATTCAGTGCC GCGTGTTACG CTAGTGCGCC GACGTCTCCC 
GGTGCCCCGA CAATCGGAAC CGCCACACCT GGCAACAGCC AGGCCACGGT GTCCTTCACT 
GCCCCTGCCA GCGATGGCGG TGCGGCGATC ACCAGCTATA CCGTGACGGC AAGTCCGGGT 
GGCGCGACGG CAACCGGCTC GGCAAGCCCG ATCACCGTGA CAGGCCTGAC CAATGGTACG 
GCCTATACAT TCACAGTCAC CGCCACCAAC AGTGTTGGAA CCGGGACGGC TTCGGCAGCA 
ACGAGCGCGG TCACGCCGAC AGTGCCAACC TTTACCTTTT CCCCTGCCTC AGGCGCGTTG 
ACTGCGGCAA CTGTTGGAAC AGCCTATAGC CAGACAGTCA CTGCTTCGGG CGGAACGTCG 
CCCTATACCT ATGCTGTTTC ATCAGGAACA CTTCCTGCTG GCATGAGCCT AAACACATCG 
ACCGGAGAGA TCTCCGGCAC GCCGTCAAGC GTGGAAAGCG CTAGCTTCAC CATCTCAGCC 
ACGGATGCCA ATAGCGCGAC GAGCTCGGCA AGTTATTCCC TCGCCGTGGC CGCAGGCCTT 
CCTGGTGCGC CGACGATTGG ATCGGCTACA GCTGGAAACG GCCAGGCCAC GGTGTCCTTC 
ACCGCTCCGG TCAGCAATGG CGGTGCGGCG ATCACCAGCT ATACCGTGAC GGCAAGTCCG 
GGTGGCGCGA CGGCAACCGG CTCGGCAAGC CCGATCAATG TGACGGGTCT CGCCAATGGT 
ACAGCCTATA CCTTCACGGT CACCGCGACC AACAGTGTTG GAACCGGTGC GGCTTCGGCA 
GCAACGAGCT CGGTCACCCC GACAGCGCCA ACCTTTACCT TCTCCCCCGC CTCAGGCGCG 
TTGACAGCAG CAACTGTTGG TACGGCCTAT AGCGAGACGG TCACGGTTTC GGGCGGAACG 
TCGCCCTATA CCTATGCGGT TACATCAGGG ACACTTCCTG CTGGAATGAG CCTCAACACA 
TCGACCGGGG CAATTTCCGG CACGCCGACG ACCGCCGGAA GCGCTAGCTT TACCATCACC 
GCTACCGATG CCAATAGCGC GACGGGATCG GCGAACTATT CGCTTGCCGT GGCAGCAGAC 
GTTCCAGGCG CGCCGACGAT TGGGACGGCA TCCGCCGGTG ATAGCCAGGC GACCGTTTCG 
TTTACTGCCC CGGCCAGCGA TGGTGGCGCG TCCATTACAA GCTATACCGT GACGGCAAGC 
CCGGGTGGAG CGACGGGGAC CGGATCGGCA AGCCCGATCA CCGTGACTGG CCTCACCAAT 
GGCACGGCCT ATACGTTTAC CGTGACCGCG ACCAACAGTG CCGGAACCGG GACGGCTTCA 
ACGGCATCGA ATTCGGTCAC GCCGGGAGCA TCACTCCAGG CTCCCATTGC TAACGCGGTC 
AGCGACACGG TCAGTGCGAA CTCGTCGAAT AACCCGATCA CACTGAACAT GACCGGCGGT 
GCGGCCTCGT CCGTTGCCAT TGCCACGGCC GCGTCGCATG GTACGGCCTC GGCCTCCGGC 
ACGTCGATCA CCTATACACC GACGGCTGGC TATTCCGGTT CCGACAGTTT TACCTACACT 
GCCACCAATG CCACCGGAAC ATCCTCTCCG GCCACGGTGA CCATAACGGT AACGGCCCCG 
GCGTTCACCC TGTCACCCGC CTCCGGCACT TTGACAGCAG CAACTGTTGG TACGGCCTAT 
AGCGAGACGG TCACGGTTTC GGGCGGAACG TCGCCCTATA CCTATGCGGT TACATCAGGG 
ACACTTCCTG CTGGAATGAG CCTCAACACA ACGACCGGGG CGATTTCCGG CACACCAACG 
ACCGCTGCCA ATACCAGCTT CACCATTACC GCTACCGATG CCAATAGCGC GACGGGATCG 
GCGAGCTATT CGCTTGCCGT GGCAGCAGAC GTTCCCGGCG CGCCGACAAT TGGGACGGCG 
TCTGCCGGTG ATAGCCAGGC GACCGTTTCG TTTACCGCCC CGGCCAGCGA TGGTGGCGCG 
TCCATTACAA GCTATACCGT GACGGCAAGC CCGGGTGGAG CGACGGGAAC CGGATCGGCA 
AGCCCGATCA CCGTGACTGG CCTCACCAAT GGCACGGCCT ATACGTTTAC CGTCACCGCG 
ACCAATAGTG CCGGAACCGG GACGGTTTCG GTCGCTTCGA ACTCGGTCAC CCCGTCTGCC 
GTTCTCCAGG CCCCGGTTGT CAACGCCGTC TCCGAAACAG TTGCGGCCAA TTCGTCGGCC 
AACGTGATCA CTCTCAACAT GACCGGCGGC ACGGCTTCGT CCGTTGCGGT CGCTTCAGTG 
GCATCGCATG GAACGGCCAC AGCCTCCGGC ACGTCGATCA CCTACACGCC CACAACTGGC 
TATTCCGGTT CCGACAGTTT TACCTATACT GCCACCAATG CCACCGGAAC ATCCTCGCCA 
GCTACGGTGA CCATCACGGT GACGGCGCCA ACCTTGGTCC TCTCGCCCTC GGCTGGTACC 
CTTGCAGCAG GCACGGTGGG TGCTGCCTAC AGCCAAACCG TCGCAGTATC CGGTGGCGCA 
GAGCCGTATG ACTACGAATT CCTGTCGGGA TCTTTGCCAG CTGGCCTGTC CATAACGTCA 
AGCGGTGGCG CCTCTGCCAG GATTCTTTCC GGCACGCCGT CGGCTGCCGG AACGAGTAAC 
TTCACGGTTA AAGTTACCGA TGCATATGGT GCAACGGTCA CGGCATCTTA TTCCATCACC 
ATCAATGCAG CAGCGCCGAT CGCCAACGCG CTGACGGCAA CGGTGACGGC AAACTCTTCG 
GATAACGTTC TGGCCCCCTC CATTACCGGC GGTGCTGCAA CGGCGGTCAC CATTGCCTCC 
TCGCCAAGCC ATGGGGCAGC AACGGTATCC GGCACCAATT TTATCTATAC GCCGACGGCT 
GGCTATTCCG GCGCCGACAG TTTTACCTAC ACCGCCACCA ATTCCACGGG AACATCCTCA 
CCAGCCACGG TGACCATAAC GGTGACGGCC CCGGCCTTCA CCCTGTCACC AGCCTCCGGC 
ACTTTGACAG CGGCAACTGT TGGAACTGCC TATAGCGAGA CGGTCACCGC TTCGGGCGGA 
ACATCGCCCT ATACCTATGC TGTTACCTCA GGGACGCTTC CTGCTGGCAT GAGCCTCAGC 
ACATCGACCG GGGCGATTTC CGGCACACCA ACGACAGCTG CCAACACCAG CTTCACCATC 
ACCGCCACCG ATGCCAACGG CGCCTCGGGA TCGGCAAGCT ATTCGCTTGC CGTCACGGAG 
CCATCGGTAA CGCTTACTCT TTCTCCGTCG TCAGGGGCTC TCACCACAGC AACGGTGGGC 
ACTGCCTATA GCCAGTCCGT GACGACAACG AGTGGTACCG CTCCTTATAC CTACGCTGGA 
ACCGGCCTGC CGGATGGCCT TGTCCTCGAT ACGAGTACCG GAACCATCAG CGGAACGCCG 
ACGACGGCTG GAAGCTATGC TATCGCGGTG ACGGTCACCG ATAGTGCGTC ACCCGCCAAT 
CATGGCTCGG GCAACTATAC GCTGACGGTG AACGCCGCCG CGTCCATCGC GTTCTCGCCA 
GCTGGTGGAG CGCTAAAAGA AGCTATGGCG GGCGAGGCTT ATAGCCAGCA GATATCTGCA 
ACAGGGGGAA CAGGATCGCT GATCTACAGC CTTTCCTCTG GAAGCCTGCC GAAAGGCATG 
GTGCTGAATA TCTCGACCGG TGCGCTCAAT GGACCGCTCG ATGCGGGTAC GGAAGGCGAT 
TATTCCTTTG CCATCCAGGC CCGTGACAGC AATGGTACGA CTGGCACTGC AAGCTATACC 
GTCAAAGTGA CCACGCGCGC GGTGACCGTG GCGGATCATG TGGTCGACGT TCCCGCAGGC 
GCCACGCCGA ATAATGTCTA TCTCAACAAA GACGCTACCG GAGGTCCGTT TACCGAGGCC 
GATATTGTCT CCGTCGAGCC ACCCGAGGCA GGGACGGCAA CCCTTATTCA AGGTGAGCTT 
GCAGCCGTCT CGTCAGCTTC ACCTGTCGGC TGGTATTTGA AATTCACTCC GAATCCGGCC 
TATTCGGGAC AGGCCCGTAT CGCCTATCGC CTTGGCAGTT CGCTTGGAAA TTCCAACACG 
GGCACCGTCA TCTACAACAT CAACTATAAT GCAGAGCAAG TCGCGACGGA TATCGACAAC 
CTCGTACACA GCTTTGTTCA GACCCGTCAA AACATGATCT CCTCCGCGAT CAAAGTGCCC 
GGTCTGATGG AACGAGGCCG GATGGCCAGG GCGACGACCC CGGTGACAAC CAGGATGTCT 
CCGTCTACGC AAGGAATGAC GTTCGGTTTT TCCACCAGTC TTGCACAGAT GGAATCGGCC 
CGTGACAGTG CCGACGGCGT TGCTGGCGGC TATTCCTCGC CATTCAACAT CTGGATTGAT 
GGTGCCGTTC TGGCTCATAA CGACAAGGAC ACCAATGGCA GCAAGTGGGG CAGCTTTGCC 
ATGATCAACA TGGGGGCCGA CTATCTGCTA ACCGACAAGG CGCTGCTGGG TCTTTCGTTT 
CACTACGACC GGATGACAGA CCCGACGGAT GAGGATGCGA TGCTGACCGG CAATGGCTGG 
CTGGCTGGCC CCTATACCTC TTTCGAAGTC ACCAAAGGCG TGTTCTGGGA TGCGAGCCTG 
CTGTATGGCG GGTCCTCAAA CACCATCGAT ACCCAGCTCT GGGACGGCAA TTTCGATACC 
CAGCGCTGGA TGTTGGATAC GTCCATCAAG GGAAAATGGT CTTTGGACGA AGCGACCGTG 
GTGACGCCGA AGCTAAGAGC GGTTTATTTT TCCGAAACCG TCGATGATTA CGCCGTGAAA 
AACAGCTCGG GCGACACGAT CGATCTCGAC GGGTTTACCT CGGAGCAGTT CAGGGTGAGC 
CTCGGCGCTG AAATTGCCCG TTCCTTTACA CTTGCAAGCG GCTCAACCAT GACGCCAAAA 
CTTGGTATCA CCACCGGCTT TTCTGGCCTC GACGGGTCCG GTTTGTTCGG ATCGGTCACG 
GCTGGCGCGT CACTGCAAAC CACTGAGGCT TGGGCGATTG AAGGCAGCCT TCTATTCAAC 
ATCGAAGGCG AGGGCGAAAA ATCGGTCGGT GCGAAGGTTG GATTGTCGCG GAAGTTTTGA 

 

Protein sequence

MQFGKSFRVA HVLADPKTLA WTRLKRSAGA AFRAFIGVLT ILITGLSFAT TANAALSASC 
SQVNSDFSSP RYLTNTDNFS PDYQNLTAGE YISWSFSTTG TAAGGTSSAI VIYSDNYNNL 
LVNESNLGGN INKSGNFTAS ASVDNLQMIL DVTQDNSASP SNYNTLTFSA ACYASAPTSP 
GAPTIGTATP GNSQATVSFT APASDGGAAI TSYTVTASPG GATATGSASP ITVTGLTNGT 
AYTFTVTATN SVGTGTASAA TSAVTPTVPT FTFSPASGAL TAATVGTAYS QTVTASGGTS 
PYTYAVSSGT LPAGMSLNTS TGEISGTPSS VESASFTISA TDANSATSSA SYSLAVAAGL 
PGAPTIGSAT AGNGQATVSF TAPVSNGGAA ITSYTVTASP GGATATGSAS PINVTGLANG 
TAYTFTVTAT NSVGTGAASA ATSSVTPTAP TFTFSPASGA LTAATVGTAY SETVTVSGGT 
SPYTYAVTSG TLPAGMSLNT STGAISGTPT TAGSASFTIT ATDANSATGS ANYSLAVAAD 
VPGAPTIGTA SAGDSQATVS FTAPASDGGA SITSYTVTAS PGGATGTGSA SPITVTGLTN 
GTAYTFTVTA TNSAGTGTAS TASNSVTPGA SLQAPIANAV SDTVSANSSN NPITLNMTGG 
AASSVAIATA ASHGTASASG TSITYTPTAG YSGSDSFTYT ATNATGTSSP ATVTITVTAP 
AFTLSPASGT LTAATVGTAY SETVTVSGGT SPYTYAVTSG TLPAGMSLNT TTGAISGTPT 
TAANTSFTIT ATDANSATGS ASYSLAVAAD VPGAPTIGTA SAGDSQATVS FTAPASDGGA 
SITSYTVTAS PGGATGTGSA SPITVTGLTN GTAYTFTVTA TNSAGTGTVS VASNSVTPSA 
VLQAPVVNAV SETVAANSSA NVITLNMTGG TASSVAVASV ASHGTATASG TSITYTPTTG 
YSGSDSFTYT ATNATGTSSP ATVTITVTAP TLVLSPSAGT LAAGTVGAAY SQTVAVSGGA 
EPYDYEFLSG SLPAGLSITS SGGASARILS GTPSAAGTSN FTVKVTDAYG ATVTASYSIT 
INAAAPIANA LTATVTANSS DNVLAPSITG GAATAVTIAS SPSHGAATVS GTNFIYTPTA 
GYSGADSFTY TATNSTGTSS PATVTITVTA PAFTLSPASG TLTAATVGTA YSETVTASGG 
TSPYTYAVTS GTLPAGMSLS TSTGAISGTP TTAANTSFTI TATDANGASG SASYSLAVTE 
PSVTLTLSPS SGALTTATVG TAYSQSVTTT SGTAPYTYAG TGLPDGLVLD TSTGTISGTP 
TTAGSYAIAV TVTDSASPAN HGSGNYTLTV NAAASIAFSP AGGALKEAMA GEAYSQQISA 
TGGTGSLIYS LSSGSLPKGM VLNISTGALN GPLDAGTEGD YSFAIQARDS NGTTGTASYT 
VKVTTRAVTV ADHVVDVPAG ATPNNVYLNK DATGGPFTEA DIVSVEPPEA GTATLIQGEL 
AAVSSASPVG WYLKFTPNPA YSGQARIAYR LGSSLGNSNT GTVIYNINYN AEQVATDIDN 
LVHSFVQTRQ NMISSAIKVP GLMERGRMAR ATTPVTTRMS PSTQGMTFGF STSLAQMESA 
RDSADGVAGG YSSPFNIWID GAVLAHNDKD TNGSKWGSFA MINMGADYLL TDKALLGLSF 
HYDRMTDPTD EDAMLTGNGW LAGPYTSFEV TKGVFWDASL LYGGSSNTID TQLWDGNFDT 
QRWMLDTSIK GKWSLDEATV VTPKLRAVYF SETVDDYAVK NSSGDTIDLD GFTSEQFRVS 
LGAEIARSFT LASGSTMTPK LGITTGFSGL DGSGLFGSVT AGASLQTTEA WAIEGSLLFN 
IEGEGEKSVG AKVGLSRKF