| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5253 |
|---|
| Symbol | |
|---|
| ID | 7381374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 248344 |
|---|
| End bp | 249408 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643648886 |
|---|
| Product | ABC transporter membrane spanning protein (sugars) |
|---|
| Protein accession | YP_002547123 |
|---|
| Protein GI | 222106332 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0395] ABC-type sugar transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATGC TCCAGGCCGA TACCGTTCCG TCCCCCGATT GGACCCGCCT CGAACGCCGG
GGCATTGTCA ATCGTGCTGG CTTCCTGTCG GCGCTTATCC TCTTCCTGAC GATTGTCTCT
ATTCCTATTC TCCTGCCTTA TCTCTGGCTG TTGGTGAAAT CGCTCACCTC GTCCGATGGC
GCTGTTAGCC GGCTGGTTCT TTGGCACAGT ACGGCCATCG CCGGGGTCGG TTATCTCGGT
GCAATCGGAT TGGCGTTGTT GGCAGATCGG CTGCGTAGGC CCGCCGTCAG CTGGGCTGTG
CTTGCCATGG TGATCGTCAT TCTGTCGGCT ATTTTCCTCG TCCCGCATCT GAGCTTCGAC
AATTACCGCT TTCTGTGGAA CCCTGACATT GCCAAAATCG GCACCAACCG CATGGACCTG
ATGCCATCGA TCTGGTCGGC GCTTGGCACG TCACTGGTGT TTGCGATTTC CCAGACGGCA
ATCGTCACAC TCGTCGCCAC CCCAGCCGCC TATGCGCTGT CGCGGTTCGC TTTCGCGGGC
CGTGAAAACA TTCTGCGCGG TCTGCTTCTG CTGCACGCTT TTCCGGCGCT GGCGCTTACC
GTCGCTATCT TCATCCAGCT TTACTATATG GGCCTGCTCA ACAATTTGGT GGGTGTCGTG
CTGGTGTTGA GTGCGCTTGA ACTGCCGTTT GCGATCTTCG TTCTCAAAGG CTTTTTCGAC
GGCGTGCCGT GGGACATCGA GATGAGCGCG GTGACGGATG GCGCAACGCG CTTCCAGGCC
TTTCGCATGG TGATCCTGCC ACAGATCCGC AGCGGCCTGA TTGCTGTTGC CACATTTACC
TTTTTGCGTG GCTGGGAGGA ATATGTCTTC GTTCAGACGC TGTTGATCGA AAAGAACCAG
ATGACGATGA GCCTCTACCT GTTCTTCGTC GCGCAGGACC ATATGGGAGC GGATTACGGC
ATGATCGCTG CCGTCGGCAT CGTCTATCTG TTGCCCGTGC TGGTCCTCTA CATCTTCACG
CAGAAGTACA TCACGCAAAT GAGCTTCGGC GGGATCAAAG GATAA
|
|---|
| Protein sequence | MSMLQADTVP SPDWTRLERR GIVNRAGFLS ALILFLTIVS IPILLPYLWL LVKSLTSSDG
AVSRLVLWHS TAIAGVGYLG AIGLALLADR LRRPAVSWAV LAMVIVILSA IFLVPHLSFD
NYRFLWNPDI AKIGTNRMDL MPSIWSALGT SLVFAISQTA IVTLVATPAA YALSRFAFAG
RENILRGLLL LHAFPALALT VAIFIQLYYM GLLNNLVGVV LVLSALELPF AIFVLKGFFD
GVPWDIEMSA VTDGATRFQA FRMVILPQIR SGLIAVATFT FLRGWEEYVF VQTLLIEKNQ
MTMSLYLFFV AQDHMGADYG MIAAVGIVYL LPVLVLYIFT QKYITQMSFG GIKG
|
|---|
| |