| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5248 |
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| Symbol | |
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| ID | 7381370 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 242212 |
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| End bp | 244641 |
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| Gene Length | 2430 bp |
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| Protein Length | 809 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643648882 |
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| Product | pyrroloquinoline-quinone-dependent quinate dehydrogenase |
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| Protein accession | YP_002547119 |
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| Protein GI | 222106328 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.685305 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTCAAC AAAAAGGCGC CCTCTCGGCG GTTGCCAAAC TCTGGCTGAT CCTGCTGGGT
ACGGTGCTCG TTCTCGCCGG TTTATTTCTT GCCATCGGTG GCTACCGATT GATCACGCTC
GGCGGTAGCT GGTATTTCAT CATCACCGGT ATTGCCGTGG TCCTGTCCGG CCTGCTGGTT
TTGATGAGGC GCCCGCTTGG CGCGGTGCTG TTCGTCATCG TCACGCTGTT GACCGCCGTC
TGGGCGATCT GGGATGCCGG TCTTGATTTC TGGCCGCTGA TCTCGCGCCT ATTGGCCTTC
GGCATCGGCT CCACCGTGGT GCTGCTTTCG CTGCCGCTTC TGCGCAAGGC GCGCGGCCTG
GCACCCGGCT ACGCCGGTTC ACTCACGCTT GCGGCAGTTC TGGCCTTGGC GTCCGCAGGC
GGTGTGGCCG GCATGTTCAT GCCCCATCCT TCTGTGCCGT TTACCGGCAC TCCGATTGCC
CGTGTGCCGG TCGATCCGGC AAGCGAACAG AAGAACTGGG AACATTACGG CAATACATCA
GGCGGTAGCC GCTTTGCCGC GCTGGACCAG ATCAATGTCG ATAATGTCAA AGCTCTGACG
GTCGCCTGGA CCTATCATAC CGGCGATACC CCGATCAGCC CCGGCAACAA CGGCGCGGAA
GATCAGGAAA CCCCGTTGCA GGTCGGCGAA AAGCTGTTTC TCTGCACCCC CCATAACAAC
GTCATCGCCG TCGATATCGA TAGCGGCAAG CAGTTGTGGA AGGCCGAGAT CAACGCCAAG
TCGTCGGTGT GGATGCGGTG CCGCGGTCTT GCCTATTTCG ACGCGACCCG TCCGCTGGAT
CAGCCAACGG TTCCCGGCTC GACGCCGGTC TCTGCGGTGA CTGTTGCACC GGGTGCGCTT
TGCGAACGCC GCATCCTGAT GAACACGATC CAGGCTCAGT TGATTGCACT CGATGCGGAT
ACCGGCGCGT TTTGCCCTGA TTTCGGCACC AATGGCCGCG TCGACCTGAA GATCGGCATG
GGCGATGCGC CCGATCCGCA ATATGTTCTG ACATCGGCAC CCACGCTTGC CGGAACCACT
GTCGTGGTCG GTGGCCGTAT TGCCGATAAC GTCCAGGTCG ATATGCCAGG CGGTGTCATG
CGCGGTTTCG ATGCCGTCAC CGGTGAATTG CGCTGGGCGT TTGATCCCGG CAATCCTGAG
ATCACCAAGC TGCCGCCTCC GGGCCAGACC TATACGCGCT CGACTCCGAA TGTCTGGGCG
GCGATGTCCT ACGATCCGGC CTCCAATACG GTGTTCATGC CGGTTGGTAG CCCTTCGGTG
GATCTTTACG GCACGACCCG GACACCGCTC GATCACAAAT ATGGTGCCTC CATGCTGGCA
CTCGATGCCA CCACGGGCCG TGAAAAATGG GTCTACCAGA CCGTTCACAA CGACCTCTGG
GATTTCGACG TGCCGATGCA GCCGTCCTTT ATCGACTTTC CGAAGGCGGA TGGCACCAAG
GTTCCAGCCC TGGTTTTCGG CACCAAGGCC GGTCAGCTCT ACGTTCTCGA CCGGCAAACC
GGCCGGGCGC TGACGGAGGT CAAGGAGATC CCGGTCAAGC CGGCCAATAT TCCGAACGAG
CCTTACTCTC TCACCCAGCC TTTATCGGTT GGCATGCCGC AGATCGGTAC CGGTCCCTTC
ACCGAGTCCG ACATGTGGGG TGCAACACCC TTCGACCAGC TGATGTGCCG TATCGCCTTC
AAATCCATGC GCTATGAAGG CCTCTATACG GCTCCCGGCA CAGATACCTC GCTGGCATTC
CCCGGCTCGC TCGGTGGCAT GAACTGGGGC GGTCTTTCCA CTGATCCGGT CCATAACCTG
ATTTTCGTGA ACGACATGCG CGTCGGTCTT TGGGTGAAGA TGCAGGAAGC GGCACCCACG
ACCAAGACGT CAAATGGCGG CGAAAGCGTC AATACCGGCA TGGGCCTCGT GCCGATGAAG
GGGACGCCCT ATGCGGTTCT CAAGGATCGC TTCCTGTCCG CCGCAGGCAT TCCATGCCAG
AAGCCGCCGT TTGGTACGCT GACAGCGGTG GATATGAAAA CCCAGAAGAT CGTCTGGCAG
GTGCCGGTTG GCACTGTGAT GGACCAGGGG CCGCTTGGCA TCAAGATGGG CCTGCCCATT
CCGATCGGCA TGCCAACACT CGGCGGCACG CTTGCCACGC AGGGTGGTCT GGTCTTCATT
GCAGGCACCC AGGACTATTA TCTGCGTGCC TATAGTGCAG CGACTGGTGA AGAAGTCTGG
AAAGCCCGGT TGCCGGTCGG TAGCCAGGGT GGTCCGATGA CCTTCAAATC GCCAAAGACC
GGCAAGCAAT ATGTGGTGAT CTCGGCAGGC GGCGCGCGCC AGTCGACCGA TCGTGGCGAC
TACGTCATCG CTTACGCCTT GCCGAACTGA
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| Protein sequence | MVQQKGALSA VAKLWLILLG TVLVLAGLFL AIGGYRLITL GGSWYFIITG IAVVLSGLLV
LMRRPLGAVL FVIVTLLTAV WAIWDAGLDF WPLISRLLAF GIGSTVVLLS LPLLRKARGL
APGYAGSLTL AAVLALASAG GVAGMFMPHP SVPFTGTPIA RVPVDPASEQ KNWEHYGNTS
GGSRFAALDQ INVDNVKALT VAWTYHTGDT PISPGNNGAE DQETPLQVGE KLFLCTPHNN
VIAVDIDSGK QLWKAEINAK SSVWMRCRGL AYFDATRPLD QPTVPGSTPV SAVTVAPGAL
CERRILMNTI QAQLIALDAD TGAFCPDFGT NGRVDLKIGM GDAPDPQYVL TSAPTLAGTT
VVVGGRIADN VQVDMPGGVM RGFDAVTGEL RWAFDPGNPE ITKLPPPGQT YTRSTPNVWA
AMSYDPASNT VFMPVGSPSV DLYGTTRTPL DHKYGASMLA LDATTGREKW VYQTVHNDLW
DFDVPMQPSF IDFPKADGTK VPALVFGTKA GQLYVLDRQT GRALTEVKEI PVKPANIPNE
PYSLTQPLSV GMPQIGTGPF TESDMWGATP FDQLMCRIAF KSMRYEGLYT APGTDTSLAF
PGSLGGMNWG GLSTDPVHNL IFVNDMRVGL WVKMQEAAPT TKTSNGGESV NTGMGLVPMK
GTPYAVLKDR FLSAAGIPCQ KPPFGTLTAV DMKTQKIVWQ VPVGTVMDQG PLGIKMGLPI
PIGMPTLGGT LATQGGLVFI AGTQDYYLRA YSAATGEEVW KARLPVGSQG GPMTFKSPKT
GKQYVVISAG GARQSTDRGD YVIAYALPN
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