Gene Avi_5188 details

Gene Information

• Locus tag: Avi_5188
• ID: 7381324
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 185225
• End bp: 185887
• Gene Length: 663 bp
• Protein Length: 220 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 643648837
• Product: two component response regulator
• Protein accession: YP_002547074
• Protein GI: 222106283
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGACG AATTCATTAT TATCGCTGAT GATCACCCGA TATTCCGGGA GGGCATTTTC 
GCTTTGGTTC GGCAGCTTTT GCCGCATTCA AAAATTGCGT CCACCGATAC TCTCGACGCC 
GCTCTTGAAA TTGCAAGAGC CAATCCTTTC CCGCCCAGCA TGTTCATCCT GGACCTGTTT 
TTTGAGGGAA ACAACATCGT ATCGAATTTG CGCGCGCTTC GCGAAGAATT TCGCCTGGCG 
TCGATTGTCG TGGTCACCAT GGCCAGCGAC AAAGCTTTGG TCGATACCGT CATGAATGCC 
GGGATCAACG GGTTCATCAA TAAAGCAGCC CTGCCGGATG AGATAAAGGA AATCCTGCGG 
GCGGTTCGCG AAGGTGACGT CGTTGTTCAG GTGCCGGTAT CGACGAATGC CATTGCCAGT 
TATGCCAGCC CGGCGCTAAG CCAACGCCAG CTCGACGTTT TGCATCTCCT TGCCGAGGGC 
CGGACCAATA AGGAGATCGC TATCATTCTT GGTATTTCCC CGTTCACGGT TCGCATCCAT 
GTCTCTGCTA TTTTCCGTGC ACTTGGCGTG GCGACCCGCG CCGGTGCCGT AACCAAGGGG 
ATTGCCATGG GATTGGTGCC GACCTCTCCT GGCTCATCGG AGCGGAGCTC CAATTCCAGG 
TAG 

 

Protein sequence

MTDEFIIIAD DHPIFREGIF ALVRQLLPHS KIASTDTLDA ALEIARANPF PPSMFILDLF 
FEGNNIVSNL RALREEFRLA SIVVVTMASD KALVDTVMNA GINGFINKAA LPDEIKEILR 
AVREGDVVVQ VPVSTNAIAS YASPALSQRQ LDVLHLLAEG RTNKEIAIIL GISPFTVRIH 
VSAIFRALGV ATRAGAVTKG IAMGLVPTSP GSSERSSNSR