| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5170 |
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| Symbol | |
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| ID | 7380968 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 164714 |
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| End bp | 165550 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643648821 |
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| Product | ABC transporter substrate binding protein (amino acid) |
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| Protein accession | YP_002547058 |
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| Protein GI | 222106267 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.256547 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTGCCG CCACCATGAC CAAGACAATC TTCGGTTTTG TTCTCTCTCT ATCCGCCCTC
GTCGCAACCC AGGCCTCGGC AGATGCCACG CTTGACCGTA TTAAGGGGCG TGGCAAGCTC
ACTGTCGGCG TCATCCTGTC TGGCGCACCT TTTGGTTATA TCGATCCGAA AAGCCAGGAG
CAGAAAGGGT TTAATGTCGA TATTGCCCAG GCGCTGGCTG ATGATCTCGG GGTCAAGCTG
GAGACGGTGA CGGTTACGCC GCCCAACCGC GTGCAGTTTC TCCAGCAGGG CAAAGTTGAT
ATCCTGATCG CCAATATGCA GTATACCGAA GACCGTGCCA AGGTGCTGGA TTTTGTGCCG
ACGCCTTATG ATCGCAGCGG CGGTGCTGCC GTGGTGCGTA AGGATAGCGG TTTGAAGGAT
TGGGCGGACC TGAAGGGCAA GCCGGTCTGC GTCTCGCAGG GTTCCAACTA TACCCAGCCG
CTGATCGAGG AATACGGCGC GGTCGTCAAG GCGCTGCCGA GCCAGCCGGA ATCGCTGTTG
GCGCTGCAAG GCGGCAATTG CGTGGCGGCT GTGCATGTCG GCGCAACCGT TGGGCTGTTG
TTGCAGGATC GCCCGGAGGA ATGGAAGGAT TATGCCATTC CGTTCCCGAC CGAACTGGTT
CCCTCGGACT CGGTCATCTG GCTGCGCAAG GGCGAGGCGG ATACCCAGAC CGCGCTCGAC
AACGCCGTTA AAAAACTGCA TGTTTCCGGC AAACTGCTCG ATTTCGCCAA GTCCAGCCGC
CTGCTGAATA TCGACTATCT CGAGCAGGAA CACAAGGCGC TCGCTGCGAC CAAGTAA
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| Protein sequence | MLAATMTKTI FGFVLSLSAL VATQASADAT LDRIKGRGKL TVGVILSGAP FGYIDPKSQE
QKGFNVDIAQ ALADDLGVKL ETVTVTPPNR VQFLQQGKVD ILIANMQYTE DRAKVLDFVP
TPYDRSGGAA VVRKDSGLKD WADLKGKPVC VSQGSNYTQP LIEEYGAVVK ALPSQPESLL
ALQGGNCVAA VHVGATVGLL LQDRPEEWKD YAIPFPTELV PSDSVIWLRK GEADTQTALD
NAVKKLHVSG KLLDFAKSSR LLNIDYLEQE HKALAATK
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