| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5109 |
|---|
| Symbol | |
|---|
| ID | 7380915 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 98265 |
|---|
| End bp | 99164 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643648768 |
|---|
| Product | transcriptional regulator LysR family |
|---|
| Protein accession | YP_002547005 |
|---|
| Protein GI | 222106214 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGACT ATAAAGCGCT GAAAGTGTTT CTGCTGGCTG CCGAGAAGCG GAATTTTGCG
CAGGTCGCGC GCGAACTCGA CATGACACCA GCCGCCGTGA GCCGGGCAAT AGCTGCCTTG
GAACGTGATC TTGGCGTCCA GCTCTTCGTT CGAACGACCC GTCAGGTTGC CCTGACGACA
GATGGCGCTA TTTTTGCCGC TCAGGTCCAG CCAGCGGTGA CCGCCCTGGA TAGTGCGCGG
CGCGATATCA GGAACGCAAA CAAGAGTGAT GAGGGACGGC TGCGGATCAG CGTTCCAACC
TGGTTCGGCA AGGCCATGCT GCCGCCGATC CTCTCTGGAT TCAGGACGCT CTATCCAAAA
ATGAGCTTTG AGATTTCCTT GTCGGATGGC CTGGTGAACA TTGTTGACGA CGATTATGAC
CTTGCGATCC GCATCTCCTC GCAGCCATCG GATAAGTTCA CCATCTGGCG CAAGATCCAC
ATCGTGCGGC GTATTCTTGT GGCAGCACCG GCAAGCAAAT TCGTCGATAT GCGGCATCCT
GGCGAACTGA CACCCGACGA TTGCCTTGCC TATAGCGGCG AGAGTCGGCG GGAAAACTGG
GTTCTGTCGG ACGGCGGATC AAGCATGACG ATTTCAGCCG GAGGGGCGTT CAGCGCCAAC
AGTGGAGAAG TTCTGGCTGA TATGGCGGCA GATGGCGCCG GGGTGGCGAT GCTGCCAGGA
TTTCATGTCT CGGAACATTT GAAAACAGGG CGCCTGGTTC ACGTCTTGCG AGGATGGTCG
CCGCCCGATC TATGGTTGAC GCTTTATTAT CCGCCCTATC AGGCTCTACC GCCTCGGATC
GCATCTTTCT CTAAATTTTT CGAAGAACAG GTGGCCGCTC AAATGGTTAC GCTCAATTGA
|
|---|
| Protein sequence | MNDYKALKVF LLAAEKRNFA QVARELDMTP AAVSRAIAAL ERDLGVQLFV RTTRQVALTT
DGAIFAAQVQ PAVTALDSAR RDIRNANKSD EGRLRISVPT WFGKAMLPPI LSGFRTLYPK
MSFEISLSDG LVNIVDDDYD LAIRISSQPS DKFTIWRKIH IVRRILVAAP ASKFVDMRHP
GELTPDDCLA YSGESRRENW VLSDGGSSMT ISAGGAFSAN SGEVLADMAA DGAGVAMLPG
FHVSEHLKTG RLVHVLRGWS PPDLWLTLYY PPYQALPPRI ASFSKFFEEQ VAAQMVTLN
|
|---|
| |