| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5085 |
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| Symbol | |
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| ID | 7381237 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 77346 |
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| End bp | 78086 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643648751 |
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| Product | transcriptional regulator GntR family |
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| Protein accession | YP_002546988 |
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| Protein GI | 222106197 |
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| COG category | [K] Transcription |
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| COG ID | [COG1802] Transcriptional regulators |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.131257 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGTAC GATCCCGCAC CCTCGAAACC TATGAGGTTC TGCGCCACGA CTTGCTCAAC
GGCCGCTTTA TCCCTGGGTC GAAGCTCAAG ATCGATACTT TGTGCCGGCA ACTTGGCGTC
AGCCCAGGGG CGGTGCGAGA GGCTTTGGCG CGTCTGACAT CAGATGGTCT GGTTGTCGCA
GAGGCTCAGC GCGGATTTCA TGTTACCCCG ATCTCGATCG AAGATTTACA GGATTTGACC
GAGGTACGGA TAGAAATCGA ACTTCGCTGC CTTCGCCGAT CGATAGCCAA GGGGTCTTTG
GCCTGGGAAG GTCATATCAA AGACATCAGC CATCAACTGC ACCATACCTC GATGTCTGAT
CCTGATGGCA GCAATACCGT TAGTCCTGCC TGGACTGAAC TTCATGCGGC ATTCCATGAT
GCCTTGGTTC TCGCATGCGA TAGTCGCTGG TGGCTGAAGC TTCGCGACTC CATGTTCTGG
CAGGTCGAGC GATATAGACG CATGGCGGTC CCATTCATGA AAGAGCCCCG TCACGTTGAC
ATTGAGCATG CTGAAATCGC TGAAGCCGTC CTGGCGCGCG ACACAGAACT CGCATGTTCC
CGGCTTGAAG CGCATCTCCG CAAGACGAGT GATCTCCTTT TGCGTCTAGA CGGCCCCTTT
GAAGGCCTCT TTTCAAAACC GGGAAGCAAC GTCAGTCATT CACTTTCACA AGCCGGATCG
CCAGTTCCCA CATCAACGTA A
|
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| Protein sequence | MTVRSRTLET YEVLRHDLLN GRFIPGSKLK IDTLCRQLGV SPGAVREALA RLTSDGLVVA
EAQRGFHVTP ISIEDLQDLT EVRIEIELRC LRRSIAKGSL AWEGHIKDIS HQLHHTSMSD
PDGSNTVSPA WTELHAAFHD ALVLACDSRW WLKLRDSMFW QVERYRRMAV PFMKEPRHVD
IEHAEIAEAV LARDTELACS RLEAHLRKTS DLLLRLDGPF EGLFSKPGSN VSHSLSQAGS
PVPTST
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