Gene Avi_5084 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5084 
Symbol 
ID7381236 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand+ 
Start bp76833 
End bp77324 
Gene Length492 bp 
Protein Length163 aa 
Translation table11 
GC content58% 
IMG OID643648750 
ProductCMP/dCMP deaminase zinc-binding 
Protein accessionYP_002546987 
Protein GI222106196 
COG category[F] Nucleotide transport and metabolism
[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0590] Cytosine/adenosine deaminases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.326252 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACATTCT CGCCCGTGAC CGGTCTCGAT CACGAATACT TCCTTCGTCT CAGCTTCAAG 
GTCGCGCTGA GGGCCCAGGA AACGGGCAAC CATCCCTTCG GTGCTATTCT GGTCGGGCCG 
GATGGCGAAG TGCTGATGGA ACAGGAAAAC GCCTATAACC CGACGCGCGA CATGACGGGG 
CATGCAGAAC GAGTTCTGAT GACCCGCGCC TCGCAAGCCT ACACGCCCGA ACGTCTGAAT 
CAATGCACCA TGTACACGTC AGCCGAGCCT TGTGCCATGT GTGCCGGTGC GGCCTATTGG 
GCTGGGATTG GGCGGGTGGT TTTTGGCTTG AGCGAGAGCC AATTGAAGGC GATGACAGGC 
AATCATCCTG AAAATCCGAC ACTCGACCTG CCATGCCGTG TGGTTTTCGA GGCGGGCCAA 
CGCAGCGTTG AGGTTATCGG CCCTTTGCTG AGCGAGGAAG CCGCCAAATT GCATGACAAT 
GCCTGGCGTT GA
 
Protein sequence
MTFSPVTGLD HEYFLRLSFK VALRAQETGN HPFGAILVGP DGEVLMEQEN AYNPTRDMTG 
HAERVLMTRA SQAYTPERLN QCTMYTSAEP CAMCAGAAYW AGIGRVVFGL SESQLKAMTG 
NHPENPTLDL PCRVVFEAGQ RSVEVIGPLL SEEAAKLHDN AWR