Gene Avi_9827 details

Gene Information

• Locus tag: Avi_9827
• ID: 7379967
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011986
• Strand: +
• Start bp: 24711
• End bp: 25415
• Gene Length: 705 bp
• Protein Length: 234 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643648256
• Product: Micrococcal nuclease (thermonuclease)
• Protein accession: YP_002546493
• Protein GI: 222102352
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1525] Micrococcal nuclease (thermonuclease) homologs

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACATA TTCCCCTGTT CGGCGTCATT ATCGCTGCGA TTGCCACACC TTCAATGGCC 
GCCGACCTAC AATACTATAC CCCGCGCTAC TCGGGGCGCG TTGCACCACC CGTCGATTCC 
GCGCCCGTCA GGTTGCCGGT CTTCAAAGGC GTTGTAACCG TTCTGGACGG CCGCACTCTT 
TGGTATGGCT CTCTCGGACG TGGCTATAAG GTCCGCCTCG CGAGTATCGA TGCATGCGAG 
CTCCCGCAAT GGGCTCTCCA CCCCAAGTGG GTAGACCGGA CAAAGAACCA AGCGCCTATG 
CCGGTTCCCT GTGGCCCGCT TGCAAAAGCT TGGTTGAAGC GAACCATTGG CAACAAGGTG 
ACGGTCTGCA CGACGCTTGG GTATGGGAAT GATGGCATTC CTCTCGCTCA ATGCACGGTC 
AAAGGCCGAG ACGTGGCGAC GGAAATGCTG CGCGTAGGCT GGGCGCGAGT GGATTCCCCC 
TACGCCAACC AACAGTACCT TTCCTATCAG CACGATGCCA TGGCCGCCCG TTATGGAATG 
TGGGGCACCT ACGTGCTCGA CATGAACGAA TGGCGGCGCA AAGCGGTTGA TAAGACCCTT 
GAGCGGCGAC CTCTGGCGGA TTTCAACCTT TTGGCAGAAC GAAAAAGCGA AATCTCGCCG 
CCGTTTGCTG ACGCACGCAA CAAACCTAAG AGGACAGATC GATAG 

 

Protein sequence

MKHIPLFGVI IAAIATPSMA ADLQYYTPRY SGRVAPPVDS APVRLPVFKG VVTVLDGRTL 
WYGSLGRGYK VRLASIDACE LPQWALHPKW VDRTKNQAPM PVPCGPLAKA WLKRTIGNKV 
TVCTTLGYGN DGIPLAQCTV KGRDVATEML RVGWARVDSP YANQQYLSYQ HDAMAARYGM 
WGTYVLDMNE WRRKAVDKTL ERRPLADFNL LAERKSEISP PFADARNKPK RTDR