Gene Avi_9813 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_9813 
SymbolavhB9 
ID7379956 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011986 
Strand
Start bp14727 
End bp15536 
Gene Length810 bp 
Protein Length269 aa 
Translation table11 
GC content51% 
IMG OID643648245 
Producttype IV secretion protein AvhB9 
Protein accessionYP_002546482 
Protein GI222102341 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3504] Type IV secretory pathway, VirB9 components 
TIGRFAM ID[TIGR02781] P-type conjugative transfer protein VirB9 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAGTCA GACTACTTTT TTCAGCGGCC TTCATGGCCG CAACGATGAC TCACGCCTTC 
GGCGCACAGC AGCCTCGTCC GGGCACTTTG GATTCACGCG TCACAAGCGT CGTTTACCAG
CCAAACAACG TGGTGAAGGT CTCAGCGACT TACGGCATCT CAACGATGAT CATCTTCGAT
GAAGATGAAA AGTTCGAGAC GATCTCTCTT GGCGACACCG ACAGCTGGCA GGTCGCACCG
TCTGAAAAAG GGAACATCCT TTTCGTAAAA CCTATTGCGA AGGGTGTTTC TACGAACATG
AATGTCGTGA CATCCAAGCG GATCTATTTC CTCGAATTAA ATGACTACGC GCCGACAGAC
GAACGTAAGG TCTTCGGAAT CCGGTTTGTG TACCCCGAGA AGGACTTGAA CGCATCTCTG
CGGAAAGAGG CGGAGTTTAG AGCCGCGAAT CCGAACGTAA GCAATATCGA CAAGGCCAAT
GTAAATATCG ACTATTCATT TTCGGGTGAT GCCGCTTTGA AGCCGTCTAT GGTCTTCGAT
GACGGGAAAA AGACGTTCTT TAAGTTCAAA GGGCGCGTAC CAGCGATCTT TGCGGTTCAG
TCCGACTTCT CTGAGACCCT TCGGAATTTC AGAAAAGAGG GCGAATACAT CGTCGTTGAT
GGCACGGCGA CGCAATACAC GCTGCGAGAC GGGAACCAAT GGACCTGCAT TTTCAATCTA
CGCAAGCCCG ATTTTGCAGC CCCTGACCCT GACATCATGG CTCCAAAACC TGATCCGGAC
GCAAGCAAGC GCAGAAGGAG CGGCAACTAA
 
Protein sequence
MRVRLLFSAA FMAATMTHAF GAQQPRPGTL DSRVTSVVYQ PNNVVKVSAT YGISTMIIFD 
EDEKFETISL GDTDSWQVAP SEKGNILFVK PIAKGVSTNM NVVTSKRIYF LELNDYAPTD
ERKVFGIRFV YPEKDLNASL RKEAEFRAAN PNVSNIDKAN VNIDYSFSGD AALKPSMVFD
DGKKTFFKFK GRVPAIFAVQ SDFSETLRNF RKEGEYIVVD GTATQYTLRD GNQWTCIFNL
RKPDFAAPDP DIMAPKPDPD ASKRRRSGN