| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9267 |
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| Symbol | trbD |
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| ID | 7367863 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011984 |
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| Strand | - |
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| Start bp | 209075 |
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| End bp | 209374 |
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| Gene Length | 300 bp |
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| Protein Length | 99 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 643644426 |
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| Product | conjugal transfer protein TrbD |
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| Protein accession | YP_002542723 |
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| Protein GI | 222083320 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5268] Type IV secretory pathway, TrbD component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTGAGC CCGGCTCAAA TCTTTCCCGT TCGCGGGTCC ATCGGGCGCT GTCGCGCCCG
AACCTGCTGA TGGGCGCCGA CCGCGAGCTG GTGCTGCTCA CCGGCCTTGC CGCCGTGATC
CTGATCTTCG TGGTGCTGAC CTGGTACGCA GCGCTGTTCG GTGTCGCCAT CTGGCTGATC
GCGGTCGCCG CACTTCGCAT GATGGCGAAG GCAGACCCGC TGATGCGCCG CGTCTATCTG
CGACACGTGT CCTACCGATC CCTCTACCGG CCCACCTCGA CGCCGTGGCG CAAGTTCTAA
|
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| Protein sequence | MAEPGSNLSR SRVHRALSRP NLLMGADREL VLLTGLAAVI LIFVVLTWYA ALFGVAIWLI
AVAALRMMAK ADPLMRRVYL RHVSYRSLYR PTSTPWRKF
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