| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9186 |
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| Symbol | traG |
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| ID | 7367725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011984 |
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| Strand | - |
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| Start bp | 142668 |
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| End bp | 144638 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643644370 |
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| Product | conjugal transfer coupling protein TraG |
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| Protein accession | YP_002542667 |
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| Protein GI | 222083264 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | [TIGR02767] Ti-type conjugative transfer system protien TraG |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.995414 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGTGA ATAGGCTTTT GCTGTTGATC CTGCCGGCAA TCATAATGCT CGCGGCGATG
TTCGCGACAT CCGGGATGGA GCAGCGACTG GCGGCATTCG GAACGTCCCC GCAGGCGAAG
CTGATGCTGG GACGCGCCGG GCTCGCCCTG CCCTATATTG TTGCCGCCGC GATAGGCGTG
ATCGCGCTGT TCGCAGCGAA CGGATCGGTC AACGTCAAGG CCGCCGGTCT GAGCGTGCTT
ACCGGAAACG GTATGGTCAT CATCATCGCG ATCGCGCGCG AGACAATCCG CCTGAACGGC
ATCGCCGGCA GCGTGCCGGC CGGACAATCG GTTCTGGCCT ATACCGATCC GGTGACGATG
ATCGGCGCAG GCATTGCCTT CATCAGCGGA ATGTTCGCGC TGCGTGTCGG GATCAAGGGC
AATGCCGCGT TCGAAACAGT GGCGCCCAAA CGGATCGGTG GCAAGCGCGC CGTACACGGC
GAAGCGGACT GGATGAAGAT CCAGGAGGCG GCAAAACTGT TTCCCGAACC GGGCGGCATC
GTCATCGGCG AGCGCTATCG GGTTGATCGC GACAGTGTTG CCGCCATGCC GTTTCGCGCT
GACGATCGAC AAAGCTGGGG CGCTGGCGGC AAGTCGCCGC TGCTCTGCTT CGACGGTTCC
TTCGGATCAT CGCACGGCAT CGTCTTCGCC GGCTCCGGCG GTTTCAAGAC GACATCGGTA
ACGATCCCGA CCGCGCTCAA ATGGGGCGGT GGGCTTGTCG TTCTAGACCC GTCAAACGAG
GTTGCGCCGA TGGTCTCGGA GCATCGGCGT CAGGCCGGCC GAAAGGTGAT CGTGCTCGAT
CCGACAGCCG GCGGTGTCGG CTTCAACGCC CTCGACTGGA TCGGCCGTCA TGGCAATACG
AAGGAAGAGG ATATCGTCGC CGTCGCCACA TGGATCATGA CCGACAATCC GAGGACGGCA
TCCGCCCGCG ACGACTTCTT CAGGGCGTCG GCCATGCAGC TCCTGACGGC TCTGATCGCC
GACGTCTGCC TGTCAGGGCA CACGGAAGCG GAAGACCAGA CGCTGCGCCG TGTCCGCGCC
AACCTCTCCG AACCGGAACC CAAGCTGCGC GCGCGTCTGA CGAAGATCTA CGAAGGTTCG
GAATCCGACT TCGTGAAGGA GAATGTGTCG GTCTTCGTCA ACATGACGCC GGAGACATTT
TCCGGGGTCT ACGCCAATGC GGTGAAGGAA ACCCACTGGC TCTCCTATCC GAACTATGCA
GGTCTCGTGT CGGGCGTGAG TTTCTCGACG GACGATCTCG CCGACGGCGG AACGGACATC
TTCATCGCCC TCGACCTGAA GGTGCTGGAA GCCCATCCCG GCTTCGCGCG TGTCGTGATC
GGCTCGCTGC TTAACGCGAT CTATAACCGC AACGGCAACG TAAAGGGTCG CACCCTCTTC
CTGCTCGACG AGGTGGCACG TCTCGGCTAC CTGCGCATCC TCGAAACCGC CCGCGACGCA
GGCCGCAAAT ACGGCATCAC GCTGACGATG ATCTTCCAGT CGCTCGGCCA GATGCGCGAG
GCCTATGGCG GGCGTGATGC GACCAGCAAA TGGTTCGAAT CCGCATCGTG GATTTCGTTT
TCGGCGATCA ACGATCCCGA TACCGCTGAC TATATCTCGA AGCGCTGTGG CGACACCACC
GTCGAGGTCG ACCAGACCAA CCGTTCGACC GGAATGAAGG GATCGTCGCG ATCGCGATCG
AAGCAGCTCA GCCGCCGTCC ATTGATCCTG CCGCATGAAG TTCTGCGCAT GCGGGCCGAC
GAGCAGATCG TCTTCACCTC GGGCAATCCG CCGCTCCGGT GCGGCCGCGC GATCTGGTTT
CGGCGCGAGG ATATGAAAGC CTGTGTCGGC GGGAACAGGT TCCATCGAAC CGGAACCGAT
ACGCACACCG AACATGCGCA ACCACGGCAG AAGGAAAGGA AGCGCCCATG A
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| Protein sequence | MTVNRLLLLI LPAIIMLAAM FATSGMEQRL AAFGTSPQAK LMLGRAGLAL PYIVAAAIGV
IALFAANGSV NVKAAGLSVL TGNGMVIIIA IARETIRLNG IAGSVPAGQS VLAYTDPVTM
IGAGIAFISG MFALRVGIKG NAAFETVAPK RIGGKRAVHG EADWMKIQEA AKLFPEPGGI
VIGERYRVDR DSVAAMPFRA DDRQSWGAGG KSPLLCFDGS FGSSHGIVFA GSGGFKTTSV
TIPTALKWGG GLVVLDPSNE VAPMVSEHRR QAGRKVIVLD PTAGGVGFNA LDWIGRHGNT
KEEDIVAVAT WIMTDNPRTA SARDDFFRAS AMQLLTALIA DVCLSGHTEA EDQTLRRVRA
NLSEPEPKLR ARLTKIYEGS ESDFVKENVS VFVNMTPETF SGVYANAVKE THWLSYPNYA
GLVSGVSFST DDLADGGTDI FIALDLKVLE AHPGFARVVI GSLLNAIYNR NGNVKGRTLF
LLDEVARLGY LRILETARDA GRKYGITLTM IFQSLGQMRE AYGGRDATSK WFESASWISF
SAINDPDTAD YISKRCGDTT VEVDQTNRST GMKGSSRSRS KQLSRRPLIL PHEVLRMRAD
EQIVFTSGNP PLRCGRAIWF RREDMKACVG GNRFHRTGTD THTEHAQPRQ KERKRP
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