| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9152 |
|---|
| Symbol | |
|---|
| ID | 7367702 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011984 |
|---|
| Strand | + |
|---|
| Start bp | 118728 |
|---|
| End bp | 119957 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643644347 |
|---|
| Product | aspartate aminotransferase |
|---|
| Protein accession | YP_002542644 |
|---|
| Protein GI | 222083241 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGG TACTCGAAAA ATTTGAAAAG TTGAAGACCG AGCATGCGCC CGGGCAGGAG
GTACGGCAAA AGACGCCCGC CTTCGAAGAG TTGTTGATTG GCGAAAAGCT CGAAGGTCGA
ACGGTTGATT TCTCCCATGG CGACGTCGAT GCATTCCTTC CGACCCCTGG TGCTTTCGAA
GAGTTCAGCG ACGGTGTGCA CAGCGGCGGC AAGCAAGCCT ACACCGTGTA TCGTGGGCTT
GCCGATCTCC GCGAAATTCT GTCGGTGAGG CTCACGAGCT TTACCGGCGC ACCGGTCAAC
GCTGCCGACA ACCTGATCAT TACCCCCGGA ACGCAAGGCG CTCTTTTCCT GTCTGTCGCC
GCGACTGTTG CCGCCGGCGA CAAGGTTGCA ATAGTCCAGC CCGACTATTT TGCAAACCGT
AAGCTTGTCG AATTTTTCGA AGCGGAAATG CTGCCGGTTC AGCTCGACTA TCTTGGCACT
GACAAGGCTG CGGGGCTCGA TCTCAACCAG TTGGAGGCAG CCTTCCGCGA TGGCGCCCGC
GTATTCGTGT TTTCCAATCC TAACAATCCG ACCGGCGCGG TCTATTCCAC GGAGGAAATC
GATGCCATCG CGGCGCTTGC GGACCGGTAC GGCGCAATGG TCATTGTCGA TCAACTCTAC
TCGCGCCTTT TGTACGAAGG CACGGAATAC CAGCACCTCC GCGCCGTTGG CGGAACCGGC
CGCGACAACG TCATCACGAT CATGGGGCCA TCTAAAACCG AGTCGTTGAG TGGTTACCGT
CTCGGCGTCG CCTTCGGCCC CTCATCGGTC ATCGAACGAA TGGAGCGGCT CCAGGCGATC
GTCTCCCTTC GCGCTGCCGG ATATAACCAG GCGGTCCTCC AGACTTGGTT CTCTGAACCT
GATGGCTGGA TGAGCGAGCG TATCAAACTT CACCAGGCTA TTCGCGATGA TCTCCTTACC
CGTTTCAGGG CGAGAGCAGA CGTCGCAGTA CGCACACCAC AAGCCGGAAG CTATATGTTT
GCCAAACTGC CGCGGCTTCG GGTATCGCCT ATCGACTTCG TCAAGATCTT GCGCCACCAG
GCAACGGTGA TTGTGACGCC GGGAAGCGAG TTCAGTCCCC ACACCGCCTC CAGCATCAGG
CTGAATTTCT CCCAGAATCA TGCGGCCGCT ACGGGGGCTG TCGAACGATT GGTTACGCTG
ATCGAGCGGT ACAGAGAAGC GCGGCCCTAA
|
|---|
| Protein sequence | MTTVLEKFEK LKTEHAPGQE VRQKTPAFEE LLIGEKLEGR TVDFSHGDVD AFLPTPGAFE
EFSDGVHSGG KQAYTVYRGL ADLREILSVR LTSFTGAPVN AADNLIITPG TQGALFLSVA
ATVAAGDKVA IVQPDYFANR KLVEFFEAEM LPVQLDYLGT DKAAGLDLNQ LEAAFRDGAR
VFVFSNPNNP TGAVYSTEEI DAIAALADRY GAMVIVDQLY SRLLYEGTEY QHLRAVGGTG
RDNVITIMGP SKTESLSGYR LGVAFGPSSV IERMERLQAI VSLRAAGYNQ AVLQTWFSEP
DGWMSERIKL HQAIRDDLLT RFRARADVAV RTPQAGSYMF AKLPRLRVSP IDFVKILRHQ
ATVIVTPGSE FSPHTASSIR LNFSQNHAAA TGAVERLVTL IERYREARP
|
|---|
| |