| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9144 |
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| Symbol | |
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| ID | 7367694 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011984 |
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| Strand | - |
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| Start bp | 108061 |
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| End bp | 109584 |
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| Gene Length | 1524 bp |
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| Protein Length | 507 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643644339 |
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| Product | ABC transporter substrate binding protein (oligopeptide) |
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| Protein accession | YP_002542636 |
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| Protein GI | 222083233 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.215146 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATATCT CTCGTCGTGG TTTCGTAGGC GGTTCGCTTA CACTTCCATT TGTCGGAATG
GCCGCCAAGA CCGCGTTGGC GCAGACGCCC GGCAAGTATC TTCGTTATGG CCTCAACAAT
TTTCCGGCCA ACCTGACGCC ATGGGTGAAT GCCGGCGCCG CCGCCGGCAC GTTCATGAGC
CTTGTCCACA GGGGCCTGTT CTCATTTGCC CCGGATGGAA GTCTGCAGGG AGAGCTTGCC
GAGAGTTTTG AAAATGACGG CAACAAGGTC TTCACGTTCA AGCTGCGCAA GGCGACCTAT
CACGACGGTC AGCCGCTGTT GGCAGAAGAC GTAAAGTGGA CGTTGGAACA GGTCGCAGCC
AAGGATTCGA CCGCTTACTT CCGCGCTCAG TTTCAGGAAG TCGCCTCGAT CGAGACTCCG
GATGAGCGGA CCGTCAAGGT CATCATGAAA AACCCGTCGG TGACGGTGAC CCAACTCCTG
GCGACCTACT ATATGCCGAT CCTGAAAAAG GGGACGACGA AGGAAAACAA CGCCAACGGG
ACGGGTCCCT TCAAGCTCGT CAACATTGAG CGTGGCTCCT ACATCGACGT CGAAGCCTTC
GACAAGTATT ACAAGCCGGG CCTGCCGAAA GTTTCGAAGA TCCGGCTGCA GGCATTTCCG
GACGAAAACC TGCGTGTCGC GGCCCTCCAG ACAGGTGACA TTGACATGAC GGAATACGCC
CCATGGTGGG CGATCGACAA CCTTGAGAAA GATCCCAATC TCAAGCTGGA TACGACACCG
GGCGCCTTCA TGTACCTGAT GTTCAACGGC ACGCAGGGGC CGATGGCCAA CCCACGCGTT
CGCCAGGCTG TTGCCTTCGC GATGAAGCGT GAGGCCATGG TCCAGGCGGC ATTCTATGGG
CACGGTGAAC CCCTGAGGGG TCTTCCTTTC TACAAGGGCA CTCCCTATTT TGATGCCCTG
CGCTCGAATT TCTGGACCGA AGACCTGGCG AAGGCCAAGG CACTCCTGTC GGAAGCCGGC
TTTCCGAACG GATTTTCGTG CAATCTCCTG TCAGCATCCG ACGTGGCGAT CCAGAAGGCC
ACAGCGGAGG TTGTGCAACA GGGTCTGGCG GCAATCGGCA TCCAGGCGCA GCTCAACCTT
CCGGACTTTG CAACGCGTGT TTCGCTCGGC AACAAGGGTC AGTTCGATAT CGGCGTGAAC
GGAACCGCTT GCGACAACAA TGACCCGGAC GGGATCACAT CCATCGTCGA CGATTCCCTG
TCGCCCGCCT ATACCCGCAG CCTCAACATT AAGACGCCGG GCCTGGCTGA GATGTTGGCC
AGGGGTCGTG GGGAAAGCAA TCTCGAGGCC CGCAAGGGTA TCTATGCCGA GGTCGAAAAA
CTCGTCTACC AAAACACCCC CTATGTGGGC TTGACCTGGC GCAACCAGTC CTATGCGCTG
CGCAAGAATG TCCAGGGCTT CAACAACCTT CCCGGAGCGC TCACATTCTT CTCCGGAAGA
ACCCTGGAGA GCACGTCGCT TTAG
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| Protein sequence | MNISRRGFVG GSLTLPFVGM AAKTALAQTP GKYLRYGLNN FPANLTPWVN AGAAAGTFMS
LVHRGLFSFA PDGSLQGELA ESFENDGNKV FTFKLRKATY HDGQPLLAED VKWTLEQVAA
KDSTAYFRAQ FQEVASIETP DERTVKVIMK NPSVTVTQLL ATYYMPILKK GTTKENNANG
TGPFKLVNIE RGSYIDVEAF DKYYKPGLPK VSKIRLQAFP DENLRVAALQ TGDIDMTEYA
PWWAIDNLEK DPNLKLDTTP GAFMYLMFNG TQGPMANPRV RQAVAFAMKR EAMVQAAFYG
HGEPLRGLPF YKGTPYFDAL RSNFWTEDLA KAKALLSEAG FPNGFSCNLL SASDVAIQKA
TAEVVQQGLA AIGIQAQLNL PDFATRVSLG NKGQFDIGVN GTACDNNDPD GITSIVDDSL
SPAYTRSLNI KTPGLAEMLA RGRGESNLEA RKGIYAEVEK LVYQNTPYVG LTWRNQSYAL
RKNVQGFNNL PGALTFFSGR TLESTSL
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