| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9126 |
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| Symbol | rbsC |
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| ID | 7367680 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011984 |
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| Strand | - |
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| Start bp | 91158 |
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| End bp | 92210 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643644327 |
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| Product | ABC transporter membrane spanning protein (ribose) |
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| Protein accession | YP_002542624 |
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| Protein GI | 222083221 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.364667 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCGCCA TACTCAAACC GGGAAACATG ATCAACGGGC TGCGAACGGC AGGCCTGGTG
CTCGCAATCG TCGTCATTGC GGCCTTTGTG CAGAGCCAGC ATGACTCGTT TCTCGGCATT
AACAACCTGA CGACGCTGCT GCGTTCGATG GTTGCTCTCG CTATGATCGC CTTCGCGCAG
AAGTTGATCA TTCTGCTTGG CGAGATCGAC CTTTCGGTCG GCTCTGTCTA CGGCCTGACC
TCGATTACCA TGGCGACCCT TTGGCTTGGC GGCGGAGCCC TTCCCTTCAC TCTGCCACTG
ATTCCCGCCC TCCTCGTTTC TCTGGCCATC GCCGCTTTCG TAGGCCTTTT GAACGGGTGG
TTTGTCGTCA AGGCGAGGCT TCCTTCATTC ATCGTAACGC TTGGGATGCT CAATGTCGCG
GAAGGTTTGC AGCTTCTGAT CAGCAACGCG CAGACATTCA CGCCCGCCTA TTCCGACCCG
GCACCGCCGG AGTGGGAGCT CTCCATCTTC AAGGCCATCG GCCAGGCGCC GCTTCTTTGG
AACATCCCGA GCGCGACGCT CTGGCTCGTG GCCTCCTTCC TGCTTTTTTG GTTTATAAGG
CATCGCACCG TGTTCGGCTT TCGCCTCGCC GCAATCGGCG GCAATGCCGA AGCTGCTCGC
ATCGCCCGTC TGCCGATCGT CAAGTACAAG TTGCTGGTCT TCCTCATCAG TGGATTGATG
GCCGGTCTGG CCGGCATCGT CGACTTCTCC TATGTCGGCT CGGTCGGCCC GAGACAGGCT
GGGTCTCTGC AATTCTCAGT CGTGGCAGCT GTGGTCATCG GCGGTGCAAG CCTGGCGGGC
GGTCGCGGAA CGATCGTCGG TACCCTGCTC GGCGCGATCC TCCTGTCGCT TCTGACGAAC
GGGCTTGCGC TGATGGGTGT CGGTTCCTTC GCGCAGCTTC TCTTCATCGG TATCGTCACG
ATCGGTGCCG TCTGGCTCGA TCAGGGTTCC CAGATCCTTA TCCGGCGCGC GGCCCAGCGC
TCTGCCGCCA AGCGTGAGGC GAAAAGCGAA TGA
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| Protein sequence | MLAILKPGNM INGLRTAGLV LAIVVIAAFV QSQHDSFLGI NNLTTLLRSM VALAMIAFAQ
KLIILLGEID LSVGSVYGLT SITMATLWLG GGALPFTLPL IPALLVSLAI AAFVGLLNGW
FVVKARLPSF IVTLGMLNVA EGLQLLISNA QTFTPAYSDP APPEWELSIF KAIGQAPLLW
NIPSATLWLV ASFLLFWFIR HRTVFGFRLA AIGGNAEAAR IARLPIVKYK LLVFLISGLM
AGLAGIVDFS YVGSVGPRQA GSLQFSVVAA VVIGGASLAG GRGTIVGTLL GAILLSLLTN
GLALMGVGSF AQLLFIGIVT IGAVWLDQGS QILIRRAAQR SAAKREAKSE
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