| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9083 |
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| Symbol | |
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| ID | 7367808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011984 |
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| Strand | - |
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| Start bp | 55855 |
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| End bp | 58425 |
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| Gene Length | 2571 bp |
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| Protein Length | 856 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643644300 |
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| Product | bacteriophytochrome protein |
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| Protein accession | YP_002542597 |
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| Protein GI | 222083194 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0784] FOG: CheY-like receiver
[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCAATG ACTACACCGA TGCGAACCTG ACTGTCTGCG ACCGGGAACC GATCACGCGA
CTCGATGAGA TCCAGAACTT TGCGTTCCTC ATCGCAATGT CGAACGACTG GACGATTGTT
CGCGCATCCG AAAATTGCGA GAAGTTCTTT AAAGTTAAAC CCCAGGAACT GCTCGGCACT
CGCTTCGACC GATGGATCAG TGAGATCGCG CTCCACGACA TTCGCAACCG GATGGCGATC
CTGGCGTCAA CGACAGGTGA GCGGATTTTC GACTTGAAGC TGGTGCAGGG ATTGCCCAAC
GTCGATCTCT CGATCCACTT CCAGGGCGAC CTGCTGATCA TCGAAGGCGA ACGGACACAG
AAGGCCGAAC GGGTGGAGGC GGCCTCGATG GTTCGTGCGA TGGCTGCACG TCTCCTTAAA
TCACCAACGA TCGCTAAGTT TCACCATGAT ACGGCTCGAC AGGTGCTGGC GATCACAGGC
TTTGATCGCG TCATGATCTA TCAGTTCGAC ACCGAGGGCC ATGGCGAAGT CATCGCGGAA
TCGGCACGCG CTGGAATGGA AAGCTTTCTC GGTCTCCATT ATCCCGCATC TGACATCCCG
CGTCAGGCTC GCGAACTTTA CCTGCGCAAC CCATTCCGCA TTATAGCGGA CGTCACGGCG
CCAACGGTAC CGCTCCTACC TCCCGCTGAT GCTGTAACGC CACCGCTCGA CTTATCGATG
TCGATCACCC GCGCCGTGTC GCCAGTACAC ATCGAATATC TGCGCAACAT GGGGATCGGT
GCCTCGCTAT CGATCTCGAT CGTCGTCGAG GAAAAGCTTT GGGGTCTTAT CGCATGCCAC
GCGAATGGGC CGCGCCTGCC AAGCTTTATC ATGCGGACCG CTTCCGAGCT GTTCGGCGCG
ATGTATTCGA TGATGCTCGA GAGCCGCCTG CGGCGCGGAA GTGAAGAGCA TGAGCAACGC
GCACGGGCTT TAGCTGATCG CGTCATCACC ATGATCGCCG GCGACGAGAC TTTGATGGAA
AACGCGCAAT GGCTGCAGGA CATGACGCGC GACATGGTGG ATTGCGATGG TGTCGCCATT
TATCGTAGCG GTAAAGCCCA TCTTCACGGC TCCACGCCGT CTGAAGAGAA TGTCATCGCG
CTCGCGCATC ATCTGAACGC AGCATCGCCG AGCCGGGTCT TCACGACCGA CGACCTGGCT
TCCGTGCATG CGCCGTGCAG CGCAACGGCT GATCGCGCCG CCGGCATGAT GTCGATCCCT
ATCTCACGTG TCCCACGCGA CTATATTTTG TTGTTTCGCC GAGAGCGCAT CAGCGAGATC
AGGTGGGGCG GCGATCCCGC AAAGCTCTTG GAAGCCAGCA CCGATGGTGA GCGTATGTCT
CCCCGCAAGA GCTTTGCGGC ATTCGCCCGA CTGGTCCGTG GCAGGGCTCC CCGCTTTTGC
GACCGCGACC AGCGCATCGG TGAAGCGATC AGACAGGCAC TGATCGAAGT CATCTTGCGC
TATTCGGACG GTGCCAGCGA CGAGCGAAGG CGTGCATCCG AACGTCAGGA GGTGCTCATC
GCAGAGCTCA ATCACCGCGT TCGCAACATC CTCGCTCTGA TCCGCAGCCT GGTGACAAAG
ACGAGCCAAG CTGCCGTCGA TGTCACCAGC TATGTCGACT CGCTCAGTGG CCGGGTACAG
GCGCTGGCGA GAGCGCATGA CAGGATTACG CGTCAGAGCT GGGGCCCTGC TCCGCTGGCC
GGGCTGTTCG AGGATGAAAT TGCTGCACAT GACAATGCGA GGGGCCGCCT CAGCTTGAAG
GGCCCTAATG TTCTGCTCCA GGCGCAGGCG ATCTCCACCG TAGCACTGGT CGTGCACGAA
CTCGTCACCA ACAGTTGCAA GCATGGAGCG CTTTCCGCCG CAGGTCGTGT AGAGGTGACC
GTCGAAGCAG TCGATGGCGA AGGCGTCTAT ATCAAGTGGA AGGAAATCGG CGGCCCGGCC
GTGGTTGCCC CGACACGTCG CGGCTTCGGA TCTGTCATTG TCGAACGAAC AATCCCGTTC
GATCTACAGG GCACAGCGGA GCTCCGCTTC CTGTTGGCAG GACTTGAAGC CGATTTCTTC
ATCCCGCATC ATTATGTCTT CATCGCGGAC GAGGACGAGA CACCCGCTCC GACCACATTC
AACAATGACG CCACCAAGAA GACCGACGTT ACTCCTGCCC GACTCCTTCA AGGAACGCAT
GTCCTGCTGG TCGAGGACAA TATGCTAATT GCGCTAGAGG CAGAGGACAT GCTGCACGAA
CTGGGCGCCG TTCACGTGGC CCTCGCCTCG ACGATTACCG AAGCTGAGCA GCTACTCGCA
AAACATAGCT TTCAGTTCGC GATGCTGGAC ATCAACGTCG GTCGCGGAAC GAGTTTCGAT
CTCGCGACGA AGCTTGGGGA AGCCGGCACG CCTTTCATTT TCGCGACGGG CTATGGCGAT
GAGTTGGCGA TCGCAGGGCG TAAGGGGAGC GAGGTCATTA TCCAAAAACC TTACGAGCGC
GATCACCTTG CTCGCGCCGT GCAACAGGTG CTCACTAAAC CCGTCGCATG A
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| Protein sequence | MGNDYTDANL TVCDREPITR LDEIQNFAFL IAMSNDWTIV RASENCEKFF KVKPQELLGT
RFDRWISEIA LHDIRNRMAI LASTTGERIF DLKLVQGLPN VDLSIHFQGD LLIIEGERTQ
KAERVEAASM VRAMAARLLK SPTIAKFHHD TARQVLAITG FDRVMIYQFD TEGHGEVIAE
SARAGMESFL GLHYPASDIP RQARELYLRN PFRIIADVTA PTVPLLPPAD AVTPPLDLSM
SITRAVSPVH IEYLRNMGIG ASLSISIVVE EKLWGLIACH ANGPRLPSFI MRTASELFGA
MYSMMLESRL RRGSEEHEQR ARALADRVIT MIAGDETLME NAQWLQDMTR DMVDCDGVAI
YRSGKAHLHG STPSEENVIA LAHHLNAASP SRVFTTDDLA SVHAPCSATA DRAAGMMSIP
ISRVPRDYIL LFRRERISEI RWGGDPAKLL EASTDGERMS PRKSFAAFAR LVRGRAPRFC
DRDQRIGEAI RQALIEVILR YSDGASDERR RASERQEVLI AELNHRVRNI LALIRSLVTK
TSQAAVDVTS YVDSLSGRVQ ALARAHDRIT RQSWGPAPLA GLFEDEIAAH DNARGRLSLK
GPNVLLQAQA ISTVALVVHE LVTNSCKHGA LSAAGRVEVT VEAVDGEGVY IKWKEIGGPA
VVAPTRRGFG SVIVERTIPF DLQGTAELRF LLAGLEADFF IPHHYVFIAD EDETPAPTTF
NNDATKKTDV TPARLLQGTH VLLVEDNMLI ALEAEDMLHE LGAVHVALAS TITEAEQLLA
KHSFQFAMLD INVGRGTSFD LATKLGEAGT PFIFATGYGD ELAIAGRKGS EVIIQKPYER
DHLARAVQQV LTKPVA
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