| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8332 |
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| Symbol | trbD |
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| ID | 7365280 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 256217 |
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| End bp | 256516 |
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| Gene Length | 300 bp |
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| Protein Length | 99 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643641885 |
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| Product | conjugal transfer protein TrbD |
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| Protein accession | YP_002540182 |
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| Protein GI | 222080318 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5268] Type IV secretory pathway, TrbD component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.514686 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGGCTGACG CCGGCTCCAA TCTCATCCGG TCGCGGGTCC ATCGGGCGCT GTCGCGTCCG
AACCTGTTGA TGGGCGCCGA CCGCGAACTT GTCCTGCTGA CGGCGCTTGT GGCCGTCATC
CTGATCTTCG TGGTGCTGAC CTGGTACGCC GCGCTGTTCG GGATCGCGAT CTGGCTGGTC
GCGGTTGGAG CCCTGCGCAT GATGGCGAAA GCCGATCCGT TAATGCGGCG GGTCTATATC
AGGCACATCT CCTACAAAAC CTTCTACCGC GCGACATCGT CGCCATGGCG CAAGTTCTGA
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| Protein sequence | MADAGSNLIR SRVHRALSRP NLLMGADREL VLLTALVAVI LIFVVLTWYA ALFGIAIWLV
AVGALRMMAK ADPLMRRVYI RHISYKTFYR ATSSPWRKF
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