| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8330 |
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| Symbol | trbJ |
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| ID | 7365278 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 252963 |
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| End bp | 253772 |
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| Gene Length | 810 bp |
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| Protein Length | 269 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643641883 |
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| Product | conjugal transfer protein TrbJ |
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| Protein accession | YP_002540180 |
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| Protein GI | 222080316 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
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| TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0931195 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCGAAAC GCTCTTTCAA ACTGAATAAG GTTGTCTGCG TAGCTATTGG CGCCGCCGGC
ATCTTACCGA TCGTCCTGCC CGCCTCGGCG CTCGCCGGCG GCGTGACGGG GCAGGCGACG
GAATGGACGC AGCTTGCCAA CAACACCGAG CTGATAAGCC TCGTCGGCAA GTCGGCCGAA
CAGGTCAACA ACCAGATCAC CCAGATCAAT CAGCTGGCCG AGCAGATCCA GAACCAGCTC
AATATCTACA GGAACATGCT TCAAAACACT GCGCAGCTGC CGGACCATAT CTGGGGGCAG
GTCGAGAACG ACCTCAAAAA CCTGCAGAAC GTCGTCAACG AGGGGCAGGG CATCGCCTTC
TCAATGGGCA ATGTCGAAGA TGTCATGAAG CAGCGTTTCC AGAGTTTTGC CGAGACGAAG
AGCAATCTGC CTGATGGTGC GAGCTTTTCC ACGACCTACC AGAACTGGTC CGACACCAAC
CGCGATACGA TCGCCGGCAC ACTGAAGGCC GCGAACCTGA CGTCGGAACA ATTCTCCAGC
GAAGAAAGCA CCATGTCGTC GTTGCGCTCC ATATCGGAAT CATCCGACGG CCAGATGAAG
GCCCTGCAGG TCGGGCATCA GATCGCCGCC CAGCAGGTGG CGCAGATGCA GAAGCTGCGC
GGTCTCGTCT CGCAACAGAT GACGATGATG GGCACCTGGT ATCAGTCGGA GCAGGCACAG
AAGGATCTGG CTCAAGCGAG GCGTGAACAG TTCTTCAGCG GGACCGAACA CGACATCCGC
GGCGGCCAGA CGATGGAGCC ACGCTGGTGA
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| Protein sequence | MPKRSFKLNK VVCVAIGAAG ILPIVLPASA LAGGVTGQAT EWTQLANNTE LISLVGKSAE
QVNNQITQIN QLAEQIQNQL NIYRNMLQNT AQLPDHIWGQ VENDLKNLQN VVNEGQGIAF
SMGNVEDVMK QRFQSFAETK SNLPDGASFS TTYQNWSDTN RDTIAGTLKA ANLTSEQFSS
EESTMSSLRS ISESSDGQMK ALQVGHQIAA QQVAQMQKLR GLVSQQMTMM GTWYQSEQAQ
KDLAQARREQ FFSGTEHDIR GGQTMEPRW
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