| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8313 |
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| Symbol | |
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| ID | 7365264 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 237843 |
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| End bp | 239393 |
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| Gene Length | 1551 bp |
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| Protein Length | 516 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643641869 |
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| Product | ABC transporter substrate binding protein (oligopeptide) |
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| Protein accession | YP_002540166 |
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| Protein GI | 222080302 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.291124 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTTCA TGGACAACGT CAGTCGCATT ACTTCCCTTT CTCGCAGAGG GTTCGTCTTG
GGTTCGCTTG CGACAGGAGC GATGATCGCT ACCGCACCAC ATGCGATGGC ACAGTCTGCT
GGCCAGTTGC GTTTCGGGCT ATCGTCTTAT CCAACCAACC TCGCCCCCTT TCAGCATGGC
GGAACCGCAG CGGGCGCCGT CAAACTCGCT ATCCATCGGG GACTCTTCGG TTATGCGCCC
GACGGTAAAG TTCGGCCGGA GCTGGTTGAA AAATGGAGCC GCGAGGGAGA CCGGCAGTGG
ACATTCACCT TGCGGAAGAA CGCGGTCTTC CACAACGGTG ACCCGGTCGA CACTGCCGCC
GTCAAATACA TGTTCGATCA GATCACGGCG GAGAAGTCGA CTGCCTACCT CAAGGCGGCT
TACCAGGAGA TCGAGAAGAT CGACCTTGTC GACGCGCTAA CCTTTCGCCT GACGCTCAAA
GAGCCAAACG AAACGCTTCT CTACAATCTC GCGAGTTTCA ACAGCCCCGT CATCTCTCCG
AAATCGACAC AGGACCAGAT TATCGGCTGC GGCCCCTATC GCATAACGGA GCAGGAGAGG
GGGTCTTGGA TTCGCGTCGA GGCCTCCAAA GCTTTCTATC GACCCGGCCT CCCCAAAGTG
GCAAAGATCG AATTCAAAGC ATTTGCAGAC GAAGATTCGC GCGTCGTTGC GTTGGAATCG
GGTGATGTCG ATATCGTCGA ATTCGTACCC TGGCAGAGTA TGGCGCGCAT CGAAGGCGAG
AGCAACTTGC GTCTCGACGC GGTCGATGGG CCGTGTCTCG GGATAACTTT CAACATGAAA
CAGGGGCCGT TCGTTGACAA GCGGATCCGT CAGGCTGTTG CATATGCAGT CGACCGCAGC
GCAGTATTGC AGGCCTCGTT CTTCGGGCGC GGTTCCATAC TCGAAGGTCT GCCCATCCCG
AAAGATTCCT TTGCGTTCGA TCCGGCCCTG CAGGGCCACT GGAAACGCGA TGTCGAGAAA
GCGAGAAAGC TGATGCAGGA AGCCGGTGCA TCCGGTGGGA TTGCCGCAAC AATGCTCTCG
ACATCGCAAT ACGGCATGCA TCGATCCGCC GCGGAAATTT GCCAGCAAAA CCTCGCGGAC
ATCGGCATTG CAGTCGAACT ACAGCTTCCG GACTATCCGA CGCGCATGCA ACTTGGTAAT
CGCGGCCAGT ATCAGTTCTC GATCACAGGC TATCCGGCTC CCTATGCTGA CCCGGACGCC
CTTAGCGTCA TTCTCTCGGG CAGCCCGACG GGATCGTATC TCCGCTCTTA TGGATATGAG
AACAAGGAGG TCGATGATCT CCTCAAGCGC GGCCGCGCAG TGGCGGATCT CAACGAGCGC
AAGAAGATCT ACAGCCAGAT CGCCGTCAAG GCCCTGGATG ACGCAGCCTT CGTCGGACTA
ACCTGGCGCT CTGAAGGCTA TGCCATGAAG AAATCGGTGC AGGGTTTCCA TAACTTGACT
GGCCCCGCCA CGATCTTCTC ACCGACGACG CTCGAAGAAA CCACACTCTA A
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| Protein sequence | MDFMDNVSRI TSLSRRGFVL GSLATGAMIA TAPHAMAQSA GQLRFGLSSY PTNLAPFQHG
GTAAGAVKLA IHRGLFGYAP DGKVRPELVE KWSREGDRQW TFTLRKNAVF HNGDPVDTAA
VKYMFDQITA EKSTAYLKAA YQEIEKIDLV DALTFRLTLK EPNETLLYNL ASFNSPVISP
KSTQDQIIGC GPYRITEQER GSWIRVEASK AFYRPGLPKV AKIEFKAFAD EDSRVVALES
GDVDIVEFVP WQSMARIEGE SNLRLDAVDG PCLGITFNMK QGPFVDKRIR QAVAYAVDRS
AVLQASFFGR GSILEGLPIP KDSFAFDPAL QGHWKRDVEK ARKLMQEAGA SGGIAATMLS
TSQYGMHRSA AEICQQNLAD IGIAVELQLP DYPTRMQLGN RGQYQFSITG YPAPYADPDA
LSVILSGSPT GSYLRSYGYE NKEVDDLLKR GRAVADLNER KKIYSQIAVK ALDDAAFVGL
TWRSEGYAMK KSVQGFHNLT GPATIFSPTT LEETTL
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