| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8288 |
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| Symbol | tms1 |
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| ID | 7365245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | + |
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| Start bp | 215346 |
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| End bp | 217517 |
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| Gene Length | 2172 bp |
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| Protein Length | 723 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 643641851 |
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| Product | tryptophan 2-monooxygenase |
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| Protein accession | YP_002540148 |
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| Protein GI | 222080284 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1231] Monoamine oxidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.658122 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTAATT TTTTCTATTC TAGAATCACA AACAGAAGCT ACTCCACCAA GAACTTGCTC
AACATTGAAG ATAAAGGTCG CTTGAAAGAT GAGCTCGAGA AGACGCGGCA AACCAACATT
TGCGAGATTT GCTTGCATCC TAGGGGGCAC AGAGCAAGCG TCTGTCGACA AATATTGATG
GGGTTCGCTT ACACAAGCAA AACCGTGCTG GAAGGTTTAC TTTCGACAAT GCCTCATGAT
GACGCCCCGC TTGGGAAAAT CTTCGTAACG GATTTGCCGC CCTATGATGA GCAAGTCCCT
CAAGTCCTGC TGATGCAAGC TGCAGCACTA GTCACAAGCT ACGAATATTC CTTTGAAGAT
TTAGCATATT TCTTGGTCCT ACCGCTGCAG ATGGCTCTAA TGCAAAAGTC TCCAAGTCTT
GGGAAGGATT TTCCGGTAAT TTCTGGTTAT TCGATCACAA AAGACAGTGT GCACTCTCCT
GTCGCGTTTG GAAGAAATTT GATGCCTAGG GGCGTCAGTT GTGAGTTTCC TCAAATCGAT
GTTCTCTACG ACTATCGCGG ATTTCTCGAG GGAGGAGCTT TTAGCGAAGG GGTCACCTCT
TTCCCTAAAG AAACTAAAAA ACCAAAAGTT GCCGTCATTG GAGCCGGTAT TTCAGGATTG
GTTTCCGCAA CACTTTTGCT GCGAAACGGT ATCGACGACG TTACCATATT CGAAGCCAAA
AACGTGGTGG GAGGTAGAGC CCACACACAC TTCTTCAAAG GCGAACCGTC GGTCTGCGCG
GAACTTGGTG CAATGAGGTT TCCTCGCAGC CAAGCTTGCT TGTTCTACCT GCTGGAATAT
CTAGGAATCA ATGCAATGAC TAAATTTCCA AATCCAGGAA CGGTTGATAC CGGCTTGTAC
TACCGCGGGA GAAGCTACAA CTGGAAAGCT CATAGCCTCC CCCCAGCAAT TTTCAATCGA
GTTCATAAAG GCTGGCGTAC ATTCTTGCAC GCGGGTTTTG TAGATGGTGT TGCAGCATTC
GCGTCCCCGT TTACACTAAC TGAGTGTCTC CGGCTTCGTA ACTATGAGTT CGCTTCCTCG
CTTTGGCAGA AGTGGCTGGA TGCCTTCAGC AGCGAAACAT TTTCGTCCGG AATAGAGAGA
ATCTTTAGGG GTGCTCACCC ACCAGGTGGG GAGAAATGGA CCAGAGATGT CGACATGGAG
CTATTCAAAG AGCTCGGAGT GGGGTCGGGC GGATTCGGTC CGGTATTTGG GTGCGGCTTC
ATCGAGATAT TGCGGTTGAT AGTGAATGGC TATGAAGACA ATGTAATGTT GCTGCTTGAT
GGAATAGAGG AAATCCCACG AAGGCTATCT CAGCAGAAAG TTGGGTCATA TTCAATCCGG
GATCGGATAA TCCACAAAGA GGTGAAGGAG ATAATTAGGA CCGAGTCAGG AATCTCGCTA
GCTATTGGCG AAGGAATGCA TGCAACCTTT GATCGCGTGA TCGTAACATC TGGCTTTACG
AATATTCAGT TGAGGCATCT CTTAACCAAT GATGACAGCT TTTTTTCTTA CGACGTTAAC
CAAGCGATCG AGAACAGCCA CATGACAGGC TCATCAAAGC TGTTTGTTCT CACGCAGAAT
AAGTTCTGGA AAGCTGAAGA ACTCCCTTCC TGCATACTGA CAACCGGTGT TGCCAAAGCA
GTTTACTGTC TGGATTACGA GCCTGATAAA CCGAGCGGAA AAGGCCTTGT ACTTTTGAGC
TACACTTGGG AAGACGATTC CCATAAACTC CTGACATTCG ATAAAGGAGA AAGATTTCAA
ATCTTGAAGC GCGATCTCGC AAAATCATAT CCTAGATTTG CGGATTTGCT TGAGCCGGCT
GATGGGGATT ACGATAACAA CATCATCCAG CACGACTGGA TTCTGGACCC ATATGCAGGC
GGTGCTTTCA AGTTAAATCG CCGATGCGAA GACGTCTATT CAAAAAGGCT TTTCTTTCAG
CCGCTTCGAC TGAACGGAGA GCCTGATGGA CGTGTCTGTT TGGCCGGGTG CAGTTGTTCC
TTTTCTGGCG GATGGGTGGA GGGCGCTATC CAGACTGCAT GTAACGCTGC GATGGCAACG
ATTAGAGATG CTGGCGGCTT AATTAGCGGC GATAACCCCC TGACAAACGA GTTCGTTAAC
TATCATTACT AG
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| Protein sequence | MANFFYSRIT NRSYSTKNLL NIEDKGRLKD ELEKTRQTNI CEICLHPRGH RASVCRQILM
GFAYTSKTVL EGLLSTMPHD DAPLGKIFVT DLPPYDEQVP QVLLMQAAAL VTSYEYSFED
LAYFLVLPLQ MALMQKSPSL GKDFPVISGY SITKDSVHSP VAFGRNLMPR GVSCEFPQID
VLYDYRGFLE GGAFSEGVTS FPKETKKPKV AVIGAGISGL VSATLLLRNG IDDVTIFEAK
NVVGGRAHTH FFKGEPSVCA ELGAMRFPRS QACLFYLLEY LGINAMTKFP NPGTVDTGLY
YRGRSYNWKA HSLPPAIFNR VHKGWRTFLH AGFVDGVAAF ASPFTLTECL RLRNYEFASS
LWQKWLDAFS SETFSSGIER IFRGAHPPGG EKWTRDVDME LFKELGVGSG GFGPVFGCGF
IEILRLIVNG YEDNVMLLLD GIEEIPRRLS QQKVGSYSIR DRIIHKEVKE IIRTESGISL
AIGEGMHATF DRVIVTSGFT NIQLRHLLTN DDSFFSYDVN QAIENSHMTG SSKLFVLTQN
KFWKAEELPS CILTTGVAKA VYCLDYEPDK PSGKGLVLLS YTWEDDSHKL LTFDKGERFQ
ILKRDLAKSY PRFADLLEPA DGDYDNNIIQ HDWILDPYAG GAFKLNRRCE DVYSKRLFFQ
PLRLNGEPDG RVCLAGCSCS FSGGWVEGAI QTACNAAMAT IRDAGGLISG DNPLTNEFVN
YHY
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