| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8275 |
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| Symbol | |
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| ID | 7365234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | + |
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| Start bp | 205056 |
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| End bp | 206207 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643641844 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_002540141 |
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| Protein GI | 222080277 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02778] DNA polymerase LigD, polymerase domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0118926 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | CTGTTCAACA ACATCCGTGT CGATTTCGAC CCGGCCATCG TCGATGTAGA CGCTCAAACG
GCTGATGGGC AAGTGCGCCA GGCTGCGTTC AAGGGGCTGC GAGAGGATAA GCCCGCAAAA
GAAGTCGAGG CCGAGAAGCC GGCAGAACCT GCCGAAGTCG ATACGCCCGA CCCGGAAACT
GCTCGCAAGC CGGCCCCGAC GCCGACGACA TCTTCCCGTC TTCGCAAGGG TGCAAAGGTC
GACGTCATGG GCGTCCTGGT CTCCAGCCCG GACAAGGAGT TGTGGCCTGA CGCACTTGAT
GGCGAACCCG TAACGAAAGT GGACCTCGCT CACTATTATG AGGCAGTCGG GCCTTGGCTC
ATCGATCATA TCAAGGGCCG GCCGTGCTCA ATCATTCGCA CGCCTGACGG TATTGGCGGG
GAGCAGTTCT TCCAAAGGCA TGCGATGCAG GGGACATCAA ACCTGATCGA ACAGGTGAAA
GTCTCAGGCG ACAAGCAGCC GTACCTCCAG ATCGGCCGCG TCGAGGGTTT GGCCGCGATC
GCACAGATCG GCGGCGCCGA GCTACATCCG TGGAACTGCG AACCCTATCA GCCTGAAGTC
CCCGGTCGTC TCGTCTTCGA TCTGGACCCA GGCCCGGATG TCGACTTCGC GACAGTGGTA
GAAGGTGCAC GAGAAATCAG GGATCGGCTT GAAGAGCTGG GTCTGGTCAG CTTCTGCAAG
ACGACGGGCG GCAAAGGGCT CCATGTTGTA ACGCCGCTCG CTGTTCCGAA GGGCAAGAAG
CTGAGCTGGG ACGAAGGCAA GGCTTTCGCG CACGACGTGT GTCTGCAGAT GGCCCGCGAC
AATCCCGAGC TTTACCTGAC CAAGATGTCC AAGGCGCAGC GTGAAGGCCG TATCTTCCTG
GATTATCTGA GAAACGACCG CACCTCGACG GCGGTGGCTC CCCTGTCGCC CCGTGCCCGG
CCGGGAGCAA CCGTCTCGAT GCCCTTGAAC TGGGCTCAAG TAAAAAAAGG TCTCGATCCG
AAGCGGTTCA CAATTCGCAC GGTGCCTGGA CTTCTGAAGG ATAATACGGC GTGGCAGGAC
TATTGCGATG GTCAAAGGCC GCTAGAGCAG GCGATCAAGC GCTTGGAGAA ACTTATGAGG
CGGGCTGCGT GA
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| Protein sequence | MFNNIRVDFD PAIVDVDAQT ADGQVRQAAF KGLREDKPAK EVEAEKPAEP AEVDTPDPET
ARKPAPTPTT SSRLRKGAKV DVMGVLVSSP DKELWPDALD GEPVTKVDLA HYYEAVGPWL
IDHIKGRPCS IIRTPDGIGG EQFFQRHAMQ GTSNLIEQVK VSGDKQPYLQ IGRVEGLAAI
AQIGGAELHP WNCEPYQPEV PGRLVFDLDP GPDVDFATVV EGAREIRDRL EELGLVSFCK
TTGGKGLHVV TPLAVPKGKK LSWDEGKAFA HDVCLQMARD NPELYLTKMS KAQREGRIFL
DYLRNDRTST AVAPLSPRAR PGATVSMPLN WAQVKKGLDP KRFTIRTVPG LLKDNTAWQD
YCDGQRPLEQ AIKRLEKLMR RAA
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