Gene Avi_8273 details

Gene Information

• Locus tag: Avi_8273
• Symbol: tnp
• ID: 7365233
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011982
• Strand: +
• Start bp: 203849
• End bp: 204409
• Gene Length: 561 bp
• Protein Length: 186 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643641843
• Product: transposase
• Protein accession: YP_002540140
• Protein GI: 222080276

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.523661
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGGTCGA TCGGAATGGA TGTGCATCGA AGTTTTGCGC AGGTCGCGTT TCTTGACCGG 
GGCAAGGTCA TGGAAGAATT CCGGGTGGAA CTGGATTACG ACGCTGTGGT GGCCTTTGGG 
CAGAAGCTTC GAAAAGATGA CGAAGTCAGA CTGGAAGCGA CCGGGAACAC CTCGGCCATC 
GTAAGGTTGC TAACGCCTTT CGTGGCCAAG GTCGTTATCG CGAACCCGCT TCAGGTGAAG 
GCCATCGCCC ACGCGCGCGT GAAGACAGAC AAAGTCGACG CGAGGATTCT GGCGCAGCTT 
CATGCCGCCG GCTTTTTGCC AGAGGTCTGG GCCGCGGATG ACGATACCCT GAACCTGCGT 
CGTCTCGTGT CGGAGCGCGC GGCGCTCGTG CGATCAGTGC GACGGGTGAA GAGCCGGGTC 
CAGGCCGTTC TCCACGCCAA TCTCGTGCCG AAATACTCGG GACATCTGTT CGGAAAAGGC 
GGCAGGGACT GGCTCTCGAC GGCCCCGTTG CCCAATGCAG AGCGCGACCT CCTCGCCATC 
TCGATGAACT GGACTGGCTG A 

 

Protein sequence

MRSIGMDVHR SFAQVAFLDR GKVMEEFRVE LDYDAVVAFG QKLRKDDEVR LEATGNTSAI 
VRLLTPFVAK VVIANPLQVK AIAHARVKTD KVDARILAQL HAAGFLPEVW AADDDTLNLR 
RLVSERAALV RSVRRVKSRV QAVLHANLVP KYSGHLFGKG GRDWLSTAPL PNAERDLLAI 
SMNWTG