| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8260 |
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| Symbol | |
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| ID | 7365225 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 194813 |
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| End bp | 195790 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643641835 |
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| Product | integrase/recombinase |
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| Protein accession | YP_002540132 |
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| Protein GI | 222080268 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.164193 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCGC CTCTGACAAT GATCGATGCC GTCGAGGCGA TGGTCGCCCA GAAGCGTACG
GTCGGTTATA AATACGAAGT CGAGGAGGCT GTTCTCTACC GGTTTGTTGC GTTCACACGC
AACCAGTTTC CCGGATTGGA GACCATCACC GAAGTTTCTG CCAATGCTTG GATCGAGGCG
GCGCAAAAGC GAGCAGTCAC GCCAGCAACC CTGCAGGGGC TGACTTCGCC GGTGAGGCAT
TTAGCTCGAT GGCTGATACT CCACGACGTT GCAGCCTATG TGCTTCCGAC AGGCGTGTTA
CGTCGGCCTG CGGCCTACAT TCCGCACATT TATTCCGACG AGGAACTGGC CGCCTTCTTC
GCCCAGACGG ATCGCTGCCA TTACTGCAGC GATGTGCCGC TGCGGCACCT GGTAATGCCG
GTCCTGTTCA GGACGATCTA CGCCTGCGGT CTGCGCTGCT CCGAAGCCCG CTTGTTGCGC
GTCGAGGATG TTGATCTGGC GACAGGGGTT TTGCTGATCC GCGACGCCAA GGGCGGCAAA
GACCGTCAGA TTCCTGTGTC CGAGCCGATT CGTGTTCGGT TGGCGCACTA TCATGCCCAG
TTCGACTGGA TGGGGCATGA GTGGTTCTTC CCTGGCAGAC GCGGTCAGCG CCTGAGGCTT
TCAAACGTTT ACAATAATTT CCGCCGGTTT CTATGGCAGG CACGCATCAG TCACGGTGGT
CGCGGCCACG GACCGCGCGT CCACGATTTT AGGCACTCAT TTGCGGTCCA TAACCTGCGG
AATTGGTTCG CTACCGGCAA GGACGTCGGC GCGATGTTGC CGATCCTGCA GACCTACATG
GGGCACTACT CCATCGCAGA CACCGCCTAC TATTTGAGGC TGACCGCCGA GTCGTATCCG
CACATTGTCA GGCGACTGGA TGAGGCGATC GGTCACGTCG TTCCCTGCCT GAAGGGAGAC
CTGCACCATG GCAACTGA
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| Protein sequence | MSAPLTMIDA VEAMVAQKRT VGYKYEVEEA VLYRFVAFTR NQFPGLETIT EVSANAWIEA
AQKRAVTPAT LQGLTSPVRH LARWLILHDV AAYVLPTGVL RRPAAYIPHI YSDEELAAFF
AQTDRCHYCS DVPLRHLVMP VLFRTIYACG LRCSEARLLR VEDVDLATGV LLIRDAKGGK
DRQIPVSEPI RVRLAHYHAQ FDWMGHEWFF PGRRGQRLRL SNVYNNFRRF LWQARISHGG
RGHGPRVHDF RHSFAVHNLR NWFATGKDVG AMLPILQTYM GHYSIADTAY YLRLTAESYP
HIVRRLDEAI GHVVPCLKGD LHHGN
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