| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8222 |
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| Symbol | virB6 |
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| ID | 7365284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 163800 |
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| End bp | 164687 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 643641810 |
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| Product | type IV secretion system protein VirB6 |
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| Protein accession | YP_002540107 |
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| Protein GI | 222080243 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3704] Type IV secretory pathway, VirB6 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTTA GCATTCCTGC GCCTTTTACG GCGATACATA CGATCTTCGA CCTTGCCTTT
ACCGTCGGGC TGGATACGCT GCTTGGGGAC ATTCAACGGG CAGTCAGCGC GCCTCTTGTG
GCCTGCGTGA CGCTATGGAT CATTGTCCAG GGCATCCTTG TAATGCGTGG AGAAATGGAC
GCACGGGGCG GAATCACCCG CGTAATCATG ATATCGGTCG TTGTTGCTCT TGTCGTTGAG
CAGGCGGAAT ATCATGATTA CGTTGTTTCG GTGTTCGAGG ATACAATTCC GAATTTCATT
CAACAGTTCG GTATTAGTGG CCTTCCTTTG CAGACGATTC CTGCTCAGCT CGACACGATG
TTTTCACTCA CTCAAGTAGC CTTTCAGAAG ATTGCTTCTG AAATTGGGCC GATGAACGAC
CAAGACATCC TCGCCTTTCA GGGCGCACAA TGGATTTTCT ATGGAACGCT TTGGACTGCG
TTTGGAATAT ATGATGCCGT CGGGATCCTC ACCAAAGTGC TATTGGCGAT CGGTCCATTG
ATCCTCATTG GCTATCTCTT TGATCGTACT AGAGATATGG CCGCGAAATG GATCGGTCAG
CTTCTCACTT ATGGGATACT TCTGCTTCTA TTAAACGTAG TGGCAACGAT CGTTGTTCTG
ACGGAAGCGA CAGCGCTCGT GCTAATACTC GCGGCCGTCA CTTCTGCTGG CACAACGGCA
GCCAAGATCA TTGGTCTCTA TGAACTCGAC ATGTTCTTCC TAACCGGCGA CGCCCTGATC
GTCGCTCTTC CGGCAATCGC CGGGAATATT GGAGGTAGCT ATTGGAGCGG CGGGACGCAA
ACTGTCGGTA GTCTAAATCG TCATCTCGCC CGGACAATCC GCCGTTAG
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| Protein sequence | MNFSIPAPFT AIHTIFDLAF TVGLDTLLGD IQRAVSAPLV ACVTLWIIVQ GILVMRGEMD
ARGGITRVIM ISVVVALVVE QAEYHDYVVS VFEDTIPNFI QQFGISGLPL QTIPAQLDTM
FSLTQVAFQK IASEIGPMND QDILAFQGAQ WIFYGTLWTA FGIYDAVGIL TKVLLAIGPL
ILIGYLFDRT RDMAAKWIGQ LLTYGILLLL LNVVATIVVL TEATALVLIL AAVTSAGTTA
AKIIGLYELD MFFLTGDALI VALPAIAGNI GGSYWSGGTQ TVGSLNRHLA RTIRR
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