Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_8219 |
Symbol | virB10 |
ID | 7365109 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011982 |
Strand | - |
Start bp | 160909 |
End bp | 162030 |
Gene Length | 1122 bp |
Protein Length | 373 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 643641806 |
Product | type IV secretion system protein VirB10 |
Protein accession | YP_002540103 |
Protein GI | 222080240 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAGGAGG TGAGTGCCCA ATCCAGAGAG GGTATCGACG CCCCCGGATC CCTCGTTACC GATCTTCACG GCCGGCGCCT TTCAGGATCG CAAAAGCTCC TTGTTGCTGG CTTGGTTCTG GTACTGTCGT TGGGCCTTAT TTGGCTTGGT GCGCGTCCAA AGAAAAAGAC CGAGCCGTCA CCACCAAATA CAGTGATTGA TGCCAACACG AAGCCCTTTC GTCCGGCCCC GATTGATATT CCCACAACGC CCCCGCCAAC TTCAGAAGCA ACGGTCTTGC CGTCGGATCA ACATCAGCGA GAACACAACG AACTGAGGCC CGAAGAAACA CCGATCTTTG CTTACAGCGG AGGTACTCAG AATGGCGTCA AATCTGTGGC GAATGCTGAA ATCAAGAACG GCGACGACGA CGATAGAAAC CCCGACTCCC TAGCAGTGTC TGAGCATTCG GCTGAAAACG ATCTTTCGGC CCGCTTGAAA CCGACAGTGG TGCAGCCTAG TCTCGCTACA CTTTTGCCGC ACCCAGATTT CACTGTTACG CAAGGAACGA TCATTCCCTG CATACTGCAA ACCGCCATTG ATACACATCT CGCGGGGTAT GTGAAATGTG TATTGCCACA AGACATACGC GGAGCAACCG GAAATGTTGT ACTTCTGGAT CGTGGAACGA CCGTCGTCGG TGAGATCCAG CGTGGACTGC AGCAGGGAGA TGCCCGCGTT TTCGTTCTCT GGAATCGCGC GGAGACGCCC TCACACGCCG TCGTCTCTCT TTCGTCTCCG GGGGCCGACG AACTCGGCCG TTCCGGACTG CGCGGTACGG TCGACAATCA TTTCTGGAAA CGCTTCAGCG GGGCAATGCT ACTGAGTGTC GTTCAGGGCG CAGTCCAGGC GGCAAGTAGC TACGCAGGGA ATTCGGCCGG CGGGACCAGC TTCAATAGCT TCCAAAACAA CGGCGAACAA GCGGCCGATA CGGCCTTGAG AGCGACCATA AACATTCCCC CAACCCTGAC AAAAAATCAG GGTGACACGG TCTCTATCTT CGTCGCGCGG GATTTGGATT TCTCAGGAAT TTACCAGCTT TATGTGACTG GTGGATCGGT GAAACGCCGG CGTCTGCCCT AA
|
Protein sequence | MEEVSAQSRE GIDAPGSLVT DLHGRRLSGS QKLLVAGLVL VLSLGLIWLG ARPKKKTEPS PPNTVIDANT KPFRPAPIDI PTTPPPTSEA TVLPSDQHQR EHNELRPEET PIFAYSGGTQ NGVKSVANAE IKNGDDDDRN PDSLAVSEHS AENDLSARLK PTVVQPSLAT LLPHPDFTVT QGTIIPCILQ TAIDTHLAGY VKCVLPQDIR GATGNVVLLD RGTTVVGEIQ RGLQQGDARV FVLWNRAETP SHAVVSLSSP GADELGRSGL RGTVDNHFWK RFSGAMLLSV VQGAVQAASS YAGNSAGGTS FNSFQNNGEQ AADTALRATI NIPPTLTKNQ GDTVSIFVAR DLDFSGIYQL YVTGGSVKRR RLP
|
| |