| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8178 |
|---|
| Symbol | |
|---|
| ID | 7365082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011982 |
|---|
| Strand | + |
|---|
| Start bp | 125585 |
|---|
| End bp | 126352 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643641784 |
|---|
| Product | Transcriptional regulator |
|---|
| Protein accession | YP_002540081 |
|---|
| Protein GI | 222080218 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1414] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0340255 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAGA AAAGCGTCGA GGGCGCACAG GTTATCGGCA AGTCGATCGC ATTGCTGAAG
TTCATTTCCG CGGCGGGATC AGATGGCGCC AAGGTGAAAG ACATCGCGGC CGCCTTGAAT
ATGAGCGTGC CGACGATCTA CCGCCTCGCG AGAGCATTCG AGAAAAACGG ATGGCTCGAG
CGGCTCGATC ATAAGATGAG TCTCAGACTC GGCATTGAAC TCTTTGCTCT CGGCGTCAAA
GCCGCAGACG CTGCAGGCAT CCGGTCTATA GCCCGTCCTG CGCTGGTTCG CATCAGCGAG
GAGGTGGGAG CTACCGTCTT CCTGATGTGC CGCAACGATC ATCATGTCAT CGTGGTTGAT
CGCGTATGGG CCGGCCAGAA TATCTCCACC CTCACAGATA ACGTCGGGAG CATGGTGCCC
ATGGGGGTGG GCGCGGCCTC TATCGCGATC ATGTCCACAC TGGACCAAGG CGACGTTGAA
GCGCTCACCA GGGCGAACGA ACCTTCCTAC GAGCGTTACG ACCTCACGCG AGCCGTGATC
GCTGCCACAG TGTCCGATGC CAGAGAGCGT GGTTACGCCG AGACCCAGTC AACTCTGATT
GCCGGTCTTT CCGCTCTTTC CATTCCTGTG AGAAACTTCA ACGGCGTTTC CACAACAGCG
TTAAGTGTGA ACCTGCCGAC GGACTTCCTG ACCGCCTCGC GCCGGACCCA CATCGTCGAA
TTGTTGAAAG CAGAGGTGGA CAGCATCGAG AAGATTGTTC GAAGCTGA
|
|---|
| Protein sequence | MSEKSVEGAQ VIGKSIALLK FISAAGSDGA KVKDIAAALN MSVPTIYRLA RAFEKNGWLE
RLDHKMSLRL GIELFALGVK AADAAGIRSI ARPALVRISE EVGATVFLMC RNDHHVIVVD
RVWAGQNIST LTDNVGSMVP MGVGAASIAI MSTLDQGDVE ALTRANEPSY ERYDLTRAVI
AATVSDARER GYAETQSTLI AGLSALSIPV RNFNGVSTTA LSVNLPTDFL TASRRTHIVE
LLKAEVDSIE KIVRS
|
|---|
| |