| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8162 |
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| Symbol | dfpA |
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| ID | 7365071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | + |
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| Start bp | 110875 |
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| End bp | 112443 |
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| Gene Length | 1569 bp |
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| Protein Length | 522 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643641773 |
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| Product | ABC transporter substrate binding protein (peptide) |
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| Protein accession | YP_002540070 |
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| Protein GI | 222080207 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.164688 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAATT TGAAAACGGG TTTCGGCGCG CTGGTTCTTG CCAGCCTTCT TGCCGGCGGC
GTGATGGGGC CTTCGCCCGC ATTTGCCGCC AAGACAACAC TGACATTGGG TGCGGCGGCA
AATGATGTCG GCACGCTTGA TCCACACTAC GCGACGAGCA CATCCGACAG AACCCTGGTT
GCGTGGATTT ACGGCGCGCT CGTCCGGTTT GCTCCGGGAT CCACTGATCC GGCAACGCTA
GAACCTGATC TGGCCGAGAG CTGGCAATCC AGCGACGACA AGCTCGTTTG GACCTTCAAG
TTGCGGTCCG ATGTCAAATG GCAGGCTGGC TATGGTGAAG TCACCGCTGA TGACGTGGTG
TTCAGCCTCG ACAAGGCTCG CGATCCGAAG CGATCCGCGT TTTCTGCCGA TTTCGCGGCT
TTCGACAAGG TCGACGCGGT CGATCCTCAC ACTGTCCGCA TCACGCTTTC GAGGCGCGTT
CCGAACCTGC TTGGCCTCGT GACGAACTAC GCCGGCGGCT TCATCGTCTC AAAGAAGGCT
TTCGAAGAGC GAAAGGAAGG TTTTGCTCGC GCGCCGGTCG GGTTTGGTCC GTTCGAGGTC
AAGTCGATCG TCGCCGGTCA GAATGTCAGC TTCGTTGCCA ACAAGGATTA CTTCCGGGGT
GCCCCCAAGC TGAGCACCCT CAACTACCGC TTCATCAACA ACAATGCGTC GCGTGACCTT
GCCTTCGTCG CCGGTGAAAT CGAGGCCGCT GCAGGTCTTG CCAACAAGAA CTGGCTTCAG
CGGACCGAAC CGCTTCCGGG CGCGGTGATC GATGTGTTCT ATCCGGCGGA AGTCAGCCTG
CTCCATATCA ACATCACAAA ACCTCCGTTT GACGATATCC GTGTACGCGA GGCTCTCGCC
TACGCGGTTA ACCCGCAAGC AGTCGTCGAA TTCAAGGGCG CACGGTTCAC AACCCGGCCG
ACATCCGTCG TCCCGTCGAA CAATTTGGGT TATCTCAAGG ATGCAGGCGT CTTCCCTTAT
GATCCGGCAA AAGCAAAGGC CCTTCTCAAG GACGCTGGCT TTGGAGATGG CCTGACATTC
TCGATGCTGT CGAGCCAGCT GCCGGAATAC GAGACCACTG CCCAGGTCCT CCAGGGTCAG
GTTGAGGATT CAGGCATCCA CATGCAGTTG CAACCGGTCG AGCACGCGAG CTGGCATCAG
ATGATCCGCA AGGATCTAAG CCCCGTCGTA CTTTACGGAG CGGCACGCTT CCCGATCGCC
GACATCTTTC TCACCCAGTT TTACGATTCT GCTTCGATCG TCGGCCAGCC AGGCGCGGTA
ACGAACTTCA GTCATTGCAA CGTCGCGGAC AAGCAGATCA GAGAAGCTCG AACCGAGATC
GATCCGGCCA AGCAGATTGC CCTATGGCAA GAAGCTCAAA GACTGATCCT GAAAAACGTA
TGTGCGATTC CGATCACCGA AACAAGCCAG GTGTGGGTCC ACAATCAAAA GCTCAAATGG
GGCTTTGACC TTAAGGGATC GATGTCGCTC GGTCCGTTGG TCACCGAAGC GACCCACTTT
GAAGACTAG
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| Protein sequence | MKNLKTGFGA LVLASLLAGG VMGPSPAFAA KTTLTLGAAA NDVGTLDPHY ATSTSDRTLV
AWIYGALVRF APGSTDPATL EPDLAESWQS SDDKLVWTFK LRSDVKWQAG YGEVTADDVV
FSLDKARDPK RSAFSADFAA FDKVDAVDPH TVRITLSRRV PNLLGLVTNY AGGFIVSKKA
FEERKEGFAR APVGFGPFEV KSIVAGQNVS FVANKDYFRG APKLSTLNYR FINNNASRDL
AFVAGEIEAA AGLANKNWLQ RTEPLPGAVI DVFYPAEVSL LHINITKPPF DDIRVREALA
YAVNPQAVVE FKGARFTTRP TSVVPSNNLG YLKDAGVFPY DPAKAKALLK DAGFGDGLTF
SMLSSQLPEY ETTAQVLQGQ VEDSGIHMQL QPVEHASWHQ MIRKDLSPVV LYGAARFPIA
DIFLTQFYDS ASIVGQPGAV TNFSHCNVAD KQIREARTEI DPAKQIALWQ EAQRLILKNV
CAIPITETSQ VWVHNQKLKW GFDLKGSMSL GPLVTEATHF ED
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