| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7646 |
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| Symbol | |
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| ID | 7380288 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 580634 |
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| End bp | 582223 |
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| Gene Length | 1590 bp |
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| Protein Length | 529 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643641640 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_002539937 |
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| Protein GI | 222102898 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3629] DNA-binding transcriptional activator of the SARP family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.158995 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGTCAT TAAACATCTT TGGCCGCTTT CTGATTGTCG ACTCTCATGG GTGCGACCGC
AGCCCGAGAG GATCGAAGGC GCGCGGGATA GTAGCGTTAC TTGCCATGTC ACAAGGCTAC
TCCCGCAACC GGACTTGGTT GCAGGATAAG CTGTGGAGCG ATCGAGATTC CAAGAGGGGG
TCGGACAGCC TTCGCCAAAC GCTCGTCGAC ATACGACGGG CGTTTGGCCC CTATCAAACG
ATATTGAAAG CGGATCGGGA AAAGGTAGCA CTTGATCCAA CCCGCTTTTC GATAAAATAC
CGGCTCATGC CCGCCTCGAA TGACTGGAAT AATGAGCAGG ACGCATTTGC CGACCTCGAC
ATTCGTGACC CTGAGTTTGA AGACTGGATC CGGAACTTAC GAGCCTCTCT TGCGGACAAG
GCGCGGATCA GTCCGCCCCA TGCCCTACGC AGTCATACCG CCCCCAAACC CGCAATTTTT
TTCCAATTCC TATCCGACAA CCAACCTTCG AGTGAATTGA CGTCAAGTCG ACTGATGACA
CTGACAACGA CGTCGCTCCG CGATTTAGAC GATTTTGAAA TCTTTCCCCG TCACGCTGCC
ATCGGCGGCA CTCTCCCTCC CTTGCCTGTC AAGGGCCTCA CTGTCGCAGT GCGGACCGTA
ACTTTAGGTC GAGACAGCCA TGTGGCTATT GCCCTCAGCC ATGCAGGGAC TGGACAGCTC
TATTGGTCGC GAACCACTCA AATATCGGCA TCACACACAG AGTTGCTGCA TCACGAATCC
GGGATTCTTG TCCAAGCCAT TCTTTCAACG TTGCGCGAGC GGAAGGATCA GCTTGGAATC
TCACATTCGG GAGCCATGCT CGCCAATCAT GCGCGGGCCT TGATCTTCCG ATTTGATCGG
CAAAGTTTAA GAGATGCAGA CGTCAATCTG CGCTATGCCT ATGATCGCGA TCCGCGCCCG
CAATATCTGG CATGGCGGGC ATTCCTGCGC AACATGGCAC AGTTCCAGCA TTGCAGCAGC
GCATTCCTGG ACGACAAGAT CACATCGACG GAACTGGTAC AGGAAGCGCT GCGCGAGGAC
GCTGGTAGCG CCAGCATCCT GGGCATCGGG GCCCATCTCG AATATCTTGG AGGCGGTTCA
AGCCGTGGTT CACTGCGGCT TGCTGAACGC GCTGTCAGCC TTGACCCGCT GAACGCAGTC
AATCTGGCGA TTTTATCCAA TACGGAACTG GTTCTCGACA AGCTTAGGGA TAGTCAAGGA
TCGGCTTTAA GCGCACTTGC ATTAACAGGC GGAGGAGAGC ACAGGGCCTT TGTCGAATTC
TTTTGCTGTA TGTCCGCCGC CGCGTTGGGC GAATATGCAA CGGCCATAGG TCACGCAGAA
GCAGCGCTTA TTCTGCGTCC CGCATTTCGT GCGCCCCTCA GGTATTTGAT TGCACTTTAC
AAGCAGGCGG GCATGATCGA GCAAATGGAT CGAGCCGTCT CCCGGTTGCA ACAATTCGAG
CCTGACTTCC TGCCTGCACG CTTTCTCGAC AGCGATTATC CGGTCACAAC CATGCGACGG
ATTCGGTTGA TTGACGCCAT CGCCAGTTAG
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| Protein sequence | MLSLNIFGRF LIVDSHGCDR SPRGSKARGI VALLAMSQGY SRNRTWLQDK LWSDRDSKRG
SDSLRQTLVD IRRAFGPYQT ILKADREKVA LDPTRFSIKY RLMPASNDWN NEQDAFADLD
IRDPEFEDWI RNLRASLADK ARISPPHALR SHTAPKPAIF FQFLSDNQPS SELTSSRLMT
LTTTSLRDLD DFEIFPRHAA IGGTLPPLPV KGLTVAVRTV TLGRDSHVAI ALSHAGTGQL
YWSRTTQISA SHTELLHHES GILVQAILST LRERKDQLGI SHSGAMLANH ARALIFRFDR
QSLRDADVNL RYAYDRDPRP QYLAWRAFLR NMAQFQHCSS AFLDDKITST ELVQEALRED
AGSASILGIG AHLEYLGGGS SRGSLRLAER AVSLDPLNAV NLAILSNTEL VLDKLRDSQG
SALSALALTG GGEHRAFVEF FCCMSAAALG EYATAIGHAE AALILRPAFR APLRYLIALY
KQAGMIEQMD RAVSRLQQFE PDFLPARFLD SDYPVTTMRR IRLIDAIAS
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