| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7627 |
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| Symbol | sco1 |
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| ID | 7380276 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 563836 |
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| End bp | 564495 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643641628 |
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| Product | electron transport protein |
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| Protein accession | YP_002539925 |
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| Protein GI | 222102886 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.160482 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACGCGCA GCCCACTGAT AATTCTGGCA CTCGCCGTAG CCGGGCTGTT CGTGACATCC
TTGATCGGCG TCATGATCTG GGTTGCTTAT GACAGCCCAC GGCCGGGTCC GTTTCGCACA
CAGTTCGAGC TCACCGACGA CCGGGGCAAT CCGGTCGGCC CGTCAATTTT TCATGGTTCG
CCAGCACTGG TTTATTTTGG CTATACCCAT TGCCCGGAAG TCTGCCCGAC AACGCTCTAT
GAAGTGGCCG ATTGGCTGAA GACGCTGGGA TCTGAGGGCA AAGACCTGAA GGCCTATTTC
TTCTCGATCG ACCCGGAGCG CGACACGCCG GAGGTCATGC ACGGCTATGT CACGGCCTTT
ACCGACCGCA TTACCGGTAT CACCGGGAAA CCGGAGGAAA TGAAGAAGGT CGTCGATGGC
TGGATGATCC ATGCGAGCAA GCTGCCGAGT GAAGATGGCG ATTACCACAT GAGCCACACG
GTGTCCTTGC TTCTCGTCGG CGCAGACGGT CGGTTGAAGG ACATGATTCC CTACGGTCTC
GACAAGCAAC AGGCCATCAC GAAAATCCGG GAGCTACTTT CGAACGGTCC TGGCGCAAAG
ACCGTCGGAC AGCAGCTGAG CGACAGCCTC ATTCTCCCTT CACCAGGACA ACGATCATGA
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| Protein sequence | MTRSPLIILA LAVAGLFVTS LIGVMIWVAY DSPRPGPFRT QFELTDDRGN PVGPSIFHGS
PALVYFGYTH CPEVCPTTLY EVADWLKTLG SEGKDLKAYF FSIDPERDTP EVMHGYVTAF
TDRITGITGK PEEMKKVVDG WMIHASKLPS EDGDYHMSHT VSLLLVGADG RLKDMIPYGL
DKQQAITKIR ELLSNGPGAK TVGQQLSDSL ILPSPGQRS
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