| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7618 |
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| Symbol | nikE |
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| ID | 7380269 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 557592 |
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| End bp | 558386 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643641621 |
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| Product | nickel transporter ATP-binding protein NikE |
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| Protein accession | YP_002539918 |
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| Protein GI | 222102879 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1124] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
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| TIGRFAM ID | [TIGR02769] nickel import ATP-binding protein NikE |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATACTGC TGCAAGCAAA ACATCTGAGC AAACATTATC AGCACTACTC GCTGCTTGGC
GCAAGTCCGG CCCGAACGGT TGTGGAGGGT GTCTCGCTTT CCATTGCCAA CAGCGAAACC
GTCGCCCTTC TCGGCCGCAG CGGCTGTGGC AAGAGCACGC TGGCCAGATT ATTGGCGGGG
CTGGAACAGC CAGACAAGGG AGAGGTCTGT TTCAACGGCA CAGCCCTTGG CAAGCTCGCA
AAAGCAGACA AAGCCGCCTT TCGACGCAGT GTTCAAATGG TGTTTCAAGA TTCCCCCAGC
GCCGTTAACC CCCGTTTTGA CATTCGCGCC ATTATTGATG AGCCGCTGCG CCATCTCACC
AACCTCAATG AGGCAGACCG CGAGCACCGC CTGCGCGAGG TGCTGGACAT GGTGGAGCTT
CCCCTTGCCA TCGCCTCGAA ATTGCCGGGG CAGGTCAGCG GCGGCCAGCT GCAACGCGTC
TGCATTGCCC GCGCCCTCGC CTGCTCTCCC AAACTGATCA TTCTGGATGA GGCCGTGTCC
AACCTCGATC TTCATCTCCA GACCTCGGCC CTGTCTCTTT TGAAAGACTT GCAGCACAAA
ACCGGGATTG CCTATCTGTT TGTCACCCAT GATCTGCGCT TGGTCGAGCG GTTTGCATCA
CGGGTGCTGA TCATGGATGC GGGCCGCATT GTCGAGGAAA CCGCAACCGG GGCGCTGGGC
CATGTCAGCC ACCCCGCCTC CTTGCTGCTG AAATCAGCCA TTCTGCCCGC CTATCCGCGC
CAACTGCATA ATTGA
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| Protein sequence | MILLQAKHLS KHYQHYSLLG ASPARTVVEG VSLSIANSET VALLGRSGCG KSTLARLLAG
LEQPDKGEVC FNGTALGKLA KADKAAFRRS VQMVFQDSPS AVNPRFDIRA IIDEPLRHLT
NLNEADREHR LREVLDMVEL PLAIASKLPG QVSGGQLQRV CIARALACSP KLIILDEAVS
NLDLHLQTSA LSLLKDLQHK TGIAYLFVTH DLRLVERFAS RVLIMDAGRI VEETATGALG
HVSHPASLLL KSAILPAYPR QLHN
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