Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_7572 |
Symbol | |
ID | 7380102 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011981 |
Strand | - |
Start bp | 517027 |
End bp | 519432 |
Gene Length | 2406 bp |
Protein Length | 801 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643641584 |
Product | glucan 1,4-alpha-glucosidase |
Protein accession | YP_002539881 |
Protein GI | 222102842 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
TIGRFAM ID | [TIGR01535] glucan 1,4-alpha-glucosidase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGACCACCC TCGTCGATTT TGCTCCCGGC AATCCAGGAA TTCAAGCGCG TTGGACGTCG AGCGCAAAGA GTGGTTTGGG TACTGCGCTT TCCGCCCGGT CTCCCGTCTG GTTCACGTTG AGCCATGGGG TGCTGAATGA GGTCTATTAT CCCAGAGTGG ACAGCGCCTG TATTCGAGAT CTTGGGTTGC TCGTTATTGG TCCTGAAGGA TATTTTTCCG AGGAAAAGCG CGATTGCACC ACAACGACCC ATCAGGTCGA AAGCGGCGTA CTGGCGTTTC ATGTCGTCAA CATGTCACGA GATGGCCGCT ACCGGATCGA AAAGCAGATC ATTTCCGATC CTGCTCGCGC AACCGTTCTC CAGCGCATCA CGTTCATGCC TTTGGTCGGT AACATATCCG ATTACAAGGT CTATGCGCTG CTTGCGCCTC ATCTTGTCAA CGCCGGGATG GATAATTCCG CATGGATCGG TGAGCAGGAT GATACCACGC TTCTTTTCGC AAGCGGCCGA TCACGCTATC TTGCGCTTGG ATCATCACTT CCTTGGGCCG AGCGATCTGC TGGCTTTGCC GGGCAGTCCG ATGGCTATAC CCAATTGCTG CAAAACGGCA GTCTCGATCC CCAATATCAG CGTGCCGACG ATGGCAATAC CGCGCTGACG GGGCAAATCC CGTTCACGGA AAGTGCCAAC ACCGCAATTC TGGCCCTTAG CTTTGGCCAG TCGGAAACGG AAGCGGGCGC AAAGGCACTC GCCAGTCTGC GCGATGGGTT CGAGGCCGCA TTCGGCATGT ATTGCGCGAA CTGGCGCGGC TGGCAAAAGG GCCTCTACGA TCTGGACCGC GAGACCGCAA AGCCCATCAA TATGTACCGC GTCTCGACTG CCGTGCTTGC AGCCCATCGC GCTGCTGATC GGCGTGGTGC CGTTGTTGCC AGCCTGTCCA TTCCTTGGGG GGCGAGCAAG GGGGATGATG ATCTGGGTGG CTATCACCTT GTCTGGCCTC GCGATCTCGT GGAAAGCGCG GGCGGCTTTC TGGCTGCTGG CGACTGGAAG GAAGCAATCG AAATCCTGGA ATATCTGCGC GAGGTTCAGT TGGCGTCCGG TCGTTGGCCG CAGAATCTCT GGCTGGATGG CAAGCCCTAT TGGCTCGGGG TGCAGATGGA TGAATGCGCT TTTCCTATTC TGCTGGCCGA TCTCCTGTAT CGAAATGGAC ATCTGCCGGA AACGCTGCTG ACCCGATTCC TTCCGATGAT CCGCAAGGCG GCTGGCTACA TCATCGCAAA TGGGCCTGCC ACCAGCCAGG ACCGCTGGGA AGAAGATGGC GGTTATAGCC CGTTCACCCT GGCCGTCGAG ATCGCCGCAT TGCTGGCCGG CGCAGACATT CTGGACCGTG TTGGAGAGCC TGATGTGGCC CAGCATTTGC GCGAAACCGC CGACTGCTGG AATGAGCAGA TTGAAAACTG GACTTATACC AGCGATTCCA CCCTTTGCGA TGCCGTCGGC GTGGGAGGCT ATTATGTCCG TATCGGGGGT CTCGATGTCA CTGACGTGGC GACGGGCAGC CAAGGACAGA CCATTATCCG CAACCGGGCA GCCGATACGT CGATATTGCC GACCCGTGAC GTTATCAGCC CAGACGCCCT GGCGCTTGTT CGCTTTGGGT TGCGGGCCGC TGATGATCCG AGGATACTCG ACACGATAAA GGTTATCGAC CATCAATTGA AGATCGATCT GCCGCAAGGT CCGCTCTGGT ATCGCTACAC GGGTGACGGC TATGGCGAAC ATCCTGATGG CAGCCCGTTC GATGGCATCG GGCAGGGGCG TCCGTGGCCA TTGCTGGCGG GAGAGCGCGC GCATTACGAG CTGGCGGCTG GACATCGCGA CGTGGCCGAA CGGCTTCTGG AGACGCTTGA GGCTTCGGCT GGGACAGAGG GTCTTCTTCC CGAACAGAGC TGGGACGGAG CCGATCTCCC CGAACGCGAG TTGTTCCTGG GCCGCCCGTC AGGCAGTGCC ATGCCACTCG TCTGGGCGCA TGCGGAATAC ATCAAGCTGT TGCGTTCGCT GAACGATGGC ACGGTTTTTG ACATGCCGCC GCAGACCGTT GAGCGCTATG TAAAAGATCA GACGCCATCA ACCCTGCGCA TCTGGCGTTT CAACAATCAG ATTTCCACCA TACCCCACGG CAAGACATTG CGGCTGGAAC TGGACGCATC GGCCATGGTG CATTGGAGCG CCACGGGCTG GCACGAGGTG GCGGACACCA GGACACGCGA AACCGGTCTC GGGACCCATG TTGTCGATAT CGACCTGGCG GACGGCGCGA TCGGCCAGGA ACTGGTGTTC ACCTTCTTCT GGGAGGAGGC GGATCTCTGG GAAAATGCCA ATTTCAAAGT TCAGATCATA GCTTAA
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Protein sequence | MTTLVDFAPG NPGIQARWTS SAKSGLGTAL SARSPVWFTL SHGVLNEVYY PRVDSACIRD LGLLVIGPEG YFSEEKRDCT TTTHQVESGV LAFHVVNMSR DGRYRIEKQI ISDPARATVL QRITFMPLVG NISDYKVYAL LAPHLVNAGM DNSAWIGEQD DTTLLFASGR SRYLALGSSL PWAERSAGFA GQSDGYTQLL QNGSLDPQYQ RADDGNTALT GQIPFTESAN TAILALSFGQ SETEAGAKAL ASLRDGFEAA FGMYCANWRG WQKGLYDLDR ETAKPINMYR VSTAVLAAHR AADRRGAVVA SLSIPWGASK GDDDLGGYHL VWPRDLVESA GGFLAAGDWK EAIEILEYLR EVQLASGRWP QNLWLDGKPY WLGVQMDECA FPILLADLLY RNGHLPETLL TRFLPMIRKA AGYIIANGPA TSQDRWEEDG GYSPFTLAVE IAALLAGADI LDRVGEPDVA QHLRETADCW NEQIENWTYT SDSTLCDAVG VGGYYVRIGG LDVTDVATGS QGQTIIRNRA ADTSILPTRD VISPDALALV RFGLRAADDP RILDTIKVID HQLKIDLPQG PLWYRYTGDG YGEHPDGSPF DGIGQGRPWP LLAGERAHYE LAAGHRDVAE RLLETLEASA GTEGLLPEQS WDGADLPERE LFLGRPSGSA MPLVWAHAEY IKLLRSLNDG TVFDMPPQTV ERYVKDQTPS TLRIWRFNNQ ISTIPHGKTL RLELDASAMV HWSATGWHEV ADTRTRETGL GTHVVDIDLA DGAIGQELVF TFFWEEADLW ENANFKVQII A
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