| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7516 |
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| Symbol | |
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| ID | 7380060 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 463236 |
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| End bp | 464933 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 643641542 |
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| Product | ABC transporter substrate binding protein (oligopeptide) |
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| Protein accession | YP_002539839 |
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| Protein GI | 222102800 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGAAT GCCTGCAAAC AGGTGAGAAG CCATCCATTG AAGGTGGCAA GAAGGAGCAT
TTTTACCGTT CGATAAAAAG CCAAAATGCC GCAATCGCAA TCAAAAAAAT GGGGAACGAG
ATCGTCATGA AAACGGCTAT CAAACGCAGA AACTTTATCA AAGCAGGCGC ATCGCTGGCC
GCATTCGGCC TGTTGGGCGA TTTTGCAAAC CAAGCAATGG CGAAAAGTGT CGAGGGGGGC
ACATTAAAAA TCGGCACCAG CAATGAGCTG AATTACAACA TGCTGTGCTT CGCCATGACC
GGTGGCCCCT ACGACTATGT CTATTCCTGG CCCATTTATG AATCGCTTTT CAAACCCAAT
GCCAATGGAA CGATTGATCC CTGGCTTGCG GAATCGGTGG AAAGTGATGC CAAAGCGCTC
ACCTATACCA TCCATATCCG GCGTGGCGTG ACATTTTCCG ATGGATCGGT GCTGAACGCC
ACTGTGGTGA AATGGAATCT CGATCACTAC CTGAAAGTCG GAGCAAAGCG CGTCGCCTTG
CTCGGCTCCA TCACGTCGGT CGATGTGTTA GACGACTATA CTGTGCGCCT GGTGCTCTCA
AAATGGAGTT CGTTCATTCC CGCCGCGCTG TCGCGTGAGT GCGGCTATAT GTTCTCACAA
CAGCACTATG AAAAATACGG CGATGACTAT TGCCAGCAGC ACCCGGTTGG AACCGGCCCC
TTCGTATTGA AGGAATGGGT GCGGGATGTC AGCAAATCAT TCGTGCGCAA TGAACACTAT
TGGGGCGGCA AGGTTCTTCT CGAGGCCGTT CAGTATACGA TCTATAATGA CTCGCTGGTG
GGGCAGGCGG CCCTGATGTC GGATGAAATC GACGTGATGA TTGGACTGGG CCTGAATGGT
GTCAAAACGC TCGCCGCCAA CGGCTTTGAT GCCCCGATTG AGCCATTGCA AGACCATGCG
TCGCTGTTGG TGTTCAACTC CCTCAACACC AGCAATGACG ATCCGATGGG CAATTTGCTG
GTGCGCCAAG CCATCAGCCA TGCCATCAAT AGAAAATCGA TCATAGAGGC AGCATTTCTG
GGCTATGCCG ATATTGCCAG CCAGTTTGGT ATTGGCAGCC ATTTCGTCAA CAAGGACATT
GTCGGTTACG ATTACAATGT TGCCAAGGCG AAGGAACTGC TTGCGAAAGC GGGTTTCCCT
CAAGGCTTCT CGACAAAAAT TCAGGCCGCC GCCAGTGATA CCAACAAGAT CGTCCTGCAA
ATCATGCAGG CCGATCTGGC CAAAGTCGGC ATACAAGCCA AAATCGAATT GCTGACGGGG
GCTGCTTCCA ACAAGGCTGA AACCGGTTGG GGAAGCGGCA TGTGGTACCA CACATCCAGC
GTCTATGTGG ATGTGGCCAT GCAAATGTCC AGCATGTTTC CAAAAGGACT CACCGGCGGT
GTTCTTGGCC TGACCACCAT GTTGCGCCCT GATGACGTGA GTGATGCGCT TGTACGGGCC
GTATCATCCA CCTCGGATGC GGAATCGGTC AAAGCGGTTG GTGAAGCCAA CAAGATGATG
ATCGACACCT ACGCGCTCTA CGTGCCCATT GCCCAATATT CGACGATTTA CGTTCTCAGC
AAACGCGTCA AGGCATCAGG TATCGGCGCG ACCTTCTTCT CCGTTGCCTC TCTCTCCACC
GCGTATCTCG ACACGTGA
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| Protein sequence | MPECLQTGEK PSIEGGKKEH FYRSIKSQNA AIAIKKMGNE IVMKTAIKRR NFIKAGASLA
AFGLLGDFAN QAMAKSVEGG TLKIGTSNEL NYNMLCFAMT GGPYDYVYSW PIYESLFKPN
ANGTIDPWLA ESVESDAKAL TYTIHIRRGV TFSDGSVLNA TVVKWNLDHY LKVGAKRVAL
LGSITSVDVL DDYTVRLVLS KWSSFIPAAL SRECGYMFSQ QHYEKYGDDY CQQHPVGTGP
FVLKEWVRDV SKSFVRNEHY WGGKVLLEAV QYTIYNDSLV GQAALMSDEI DVMIGLGLNG
VKTLAANGFD APIEPLQDHA SLLVFNSLNT SNDDPMGNLL VRQAISHAIN RKSIIEAAFL
GYADIASQFG IGSHFVNKDI VGYDYNVAKA KELLAKAGFP QGFSTKIQAA ASDTNKIVLQ
IMQADLAKVG IQAKIELLTG AASNKAETGW GSGMWYHTSS VYVDVAMQMS SMFPKGLTGG
VLGLTTMLRP DDVSDALVRA VSSTSDAESV KAVGEANKMM IDTYALYVPI AQYSTIYVLS
KRVKASGIGA TFFSVASLST AYLDT
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