| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7483 |
|---|
| Symbol | |
|---|
| ID | 7380039 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | - |
|---|
| Start bp | 440590 |
|---|
| End bp | 443673 |
|---|
| Gene Length | 3084 bp |
|---|
| Protein Length | 1027 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643641523 |
|---|
| Product | Acr family transporter |
|---|
| Protein accession | YP_002539820 |
|---|
| Protein GI | 222102781 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.10196 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATTT CAGCTTTTTC CATCCGCAAT CCGGTTCCAG CCATTCTCCT GTTTGCACTC
ATGACCGTTT GCGGCTTGAT TGCCTTCGAG AAACTCAAGA TTCAGCAGTT TCCAGACATG
GACCTGCCGA CAATCAAGAT CAGCGCGACA CTGGATGGCA CCGCGCCATC GCAACTTGAA
ACCGAAGTTG CGCGCAAGAT CGAAGACAAG CTGGCAACCC TCAACAAGCT GGACCATATC
ACCACAACAA TTACCGACGG CTCCGTCTCG ATCAGCGTCT CCTTCAGTCT GGAAAAAGAC
GGGGAACAGG CGCTGAATGA AGTTCGCAAT GCGGTGGATA GCGTCACCGA TCTACCATCG
GCGATGCAGA CACCCAGCGT CTCGCGGGTC ACAGTGCAAT CGTCGGTGCT CCAGACCTAT
GCTGTGCGAT CATCAAAGCT GAATGAAACG GAACTGTCGT GGTTCGTTGA CAATGACATG
ACCAAGGCTC TGCTGAAAGC CCAAGGCGTT GGCGAGGTTG ATCGTTTTGG CGGTGTGGAC
CGCGAAATTC ATGTTGATAT CAACCCGGAC TTGCTGACTT CATTTGGTGT CACGGCGGCA
GATGTGTCGT CCCAGCTGAA ATTGGTGCAG GAAAATGCCT CCGGCGGCCG TGGAGATTTG
AACGGGCTGC ATCAGACAGT GCGCACATTG GGTGCCGTCA ACTCCGTCAA AGACATTGCA
GCACTTTCAA TTCCGTTTTC CAATGGCAAA AGTGTGCGTC TCGACCAGAT CGCCAAGGTG
ACGGATAGCT TCTCCGAACG TTCATCGCTT GCGTATATGG GGCAAACGCC GGTGATCGCC
GTTGAGGTCA AACGCAGCAA CGGCTATTCC GATACGGGTG TGGCCACCGA CCTGACACGG
GTGATGGCAG CATTTGCAGC CGAGCATCCC GAAGTCGAGA TTGTGCAGGC CTACACAACG
GTTCAGCCGA CAATCGACAA TTATGAAGCG TCGATGCACA TGCTGTATGA GGGGGCGGCG
CTGGCGATTG TTGTGGTGTT TCTCTTCTTG CGCGATTTGC GCGCAACCCT TCTGTCTGCT
GTGGCTTTGC CGCTGTCCAT CATTCCGACA TTCCTTGTGA TCTATCTCGC GAATTTCAGC
CTCAATACGA TTTCGCTGCT TTCGATTTCG CTGGTGGTCG GGATTCTCGT TGACGATGCC
ATCGTCGAGG TTGAAAATAT CGAGCGACAT CTGCGCATGG GCAAAAAGCC CTTTGATGCC
GCCATGGAGG CCGCCGACGA GATCGGCCTT GCGGTGATTG CGACAACATT CACGCTGGTT
GCGGTTTTTC TGCCAACCGC GTTTATGGCC GGGATTCCCG GGTTGATCTT CAAGCAGTTC
GGTGTGACTG CCGCCGTCGC AGTGCTGGCA TCGCTGATGG TTGCGCGTTT TCTGACGCCG
ATGATGGCTG CGTATATGAT GAAGGCGACG CCGAAAGTGG AAGTGGATGG GGTCATTATG
AAGACCTATC TCTCCATTGT GCGCGCATGC CTGCGCCACC GTTTTCTGAC CAGTCTTGGC
ATTATCGTCT TTCTTGTCGT GTCACTTTCA GCCGTGTCTC TGCTGAAGAC CGGGTTCTTC
CCGGCCTCTG ACAACGCGCA GACGCAAGTG ACATTGACAA TGCCGCCGGG ATCAGAGCTT
TCCGACACGG AAGCCATGTC GCTGAAAGCC GTAAAACTGA TTTCAGGCCT TGAAAACATC
AAGCGTGTGT TCACTGTCGT CGGCTCCTCC ACAAGTGGCG GCGGTGCCGA TAGCAGCACA
ACCAGCGACG TGACAACCGC CACATTGGTG GTTGACCTTA CCCCAATCAA TGATCGAAAA
CTGAAGCAAT CGCAGATCGA GCAACAGATG CGCAATGTCC TACAGGAGCT TGCAGGTGTG
CGTGTCGAAG TTGGCAACGG CGGCAATGGC ACCGAGCTTC AGTTGACGCT GGCAAGCGAC
GATCCGATTC TTCTCGATCA GACCGCTGCT GTTGTGGGAG AACAATTGCA TGGCTTGAAA
GGCATTGGCG GCATTACATC CAGCGCGGCC AGACAGGCCC CGGAAATCCA GATCAGCCCG
AATTTTGCCC GTGCAGCGGC TTTGGGTATC ACCTCGGATA CGATTGCGGA TGTTGTGCGC
GTGGCAACTG ATGGCGACTA TTCCACATCA CGGTCCAAGT TCAATCTTCC GCAGCGGCAG
ATCGATATCC GTGTCCGGCT TGATCCGAAA TATATTCGCA ATCTTGATGC CATCTCGCAA
CTGCAACTCT CCGGGACAAA CGGCAAAGTA TCACTCGGCG CGATTGCCGG AATCCGAATC
GGGGGCAGCC CCTCGGAGAT TGATCGGATC GACAGATCAC GCAACATTAC CTTCACCATT
CAGTTGAATG GCCGTGCCTT GGGAGACGTC AACAAGGAGG CGATGGCGCT GCCGGGATTG
AGCCACCTTC CGCCGGGGGT GCATGTTGTG CAGCAGGGTG AGCTTGAGCG GATGTCGGAA
TTGTTCACCA GCTTTGCCTT GGCGATGGGC ATCGGTATCT TCTGCATTTA TGCGGTGCTG
GTCTTGTTGT TCCACGATTT CATGCAGCCA GCGACAATCC TGATGGCACT TCCTCTCTCC
CTTGGTGGCG CACTCTTTCC GTTGATTGCC ACGGGTACGA GTTTCTCCAT GCCCGCCGTC
ATCGGCCTGT TGATGTTGAT GGGCATTGTC AGCAAGAATT CAATTCTGCT GGTGGAATAT
GCCATCATGG CGCGACGCAA TGGCATGGAC CGCTACGAGG CGCTGATCGA TGCCTGCCAC
AAACGCGCCC GCCCCATCGT GATGACAACC ATCGCCATGG GCGCTGGCAT GGCTCCTGTT
GCGCTGAGCC TCAGCGGCGG AGATACGAGC TTCCGTCAAC CCATGTCCAT CGTTGTGATT
GGCGGCTTGC TCACCTCCAC CGTTCTGAGC CTATTGGTGA TCCCCGTCAT TTTCACCTTT
GTTGATGACC TGCTGGGCCT TGTCAAACGG CCCTTCATGA AGAGCCAAAA GGATGTTGCT
GATGGGGAAT CCGTGAACGG CTGA
|
|---|
| Protein sequence | MNISAFSIRN PVPAILLFAL MTVCGLIAFE KLKIQQFPDM DLPTIKISAT LDGTAPSQLE
TEVARKIEDK LATLNKLDHI TTTITDGSVS ISVSFSLEKD GEQALNEVRN AVDSVTDLPS
AMQTPSVSRV TVQSSVLQTY AVRSSKLNET ELSWFVDNDM TKALLKAQGV GEVDRFGGVD
REIHVDINPD LLTSFGVTAA DVSSQLKLVQ ENASGGRGDL NGLHQTVRTL GAVNSVKDIA
ALSIPFSNGK SVRLDQIAKV TDSFSERSSL AYMGQTPVIA VEVKRSNGYS DTGVATDLTR
VMAAFAAEHP EVEIVQAYTT VQPTIDNYEA SMHMLYEGAA LAIVVVFLFL RDLRATLLSA
VALPLSIIPT FLVIYLANFS LNTISLLSIS LVVGILVDDA IVEVENIERH LRMGKKPFDA
AMEAADEIGL AVIATTFTLV AVFLPTAFMA GIPGLIFKQF GVTAAVAVLA SLMVARFLTP
MMAAYMMKAT PKVEVDGVIM KTYLSIVRAC LRHRFLTSLG IIVFLVVSLS AVSLLKTGFF
PASDNAQTQV TLTMPPGSEL SDTEAMSLKA VKLISGLENI KRVFTVVGSS TSGGGADSST
TSDVTTATLV VDLTPINDRK LKQSQIEQQM RNVLQELAGV RVEVGNGGNG TELQLTLASD
DPILLDQTAA VVGEQLHGLK GIGGITSSAA RQAPEIQISP NFARAAALGI TSDTIADVVR
VATDGDYSTS RSKFNLPQRQ IDIRVRLDPK YIRNLDAISQ LQLSGTNGKV SLGAIAGIRI
GGSPSEIDRI DRSRNITFTI QLNGRALGDV NKEAMALPGL SHLPPGVHVV QQGELERMSE
LFTSFALAMG IGIFCIYAVL VLLFHDFMQP ATILMALPLS LGGALFPLIA TGTSFSMPAV
IGLLMLMGIV SKNSILLVEY AIMARRNGMD RYEALIDACH KRARPIVMTT IAMGAGMAPV
ALSLSGGDTS FRQPMSIVVI GGLLTSTVLS LLVIPVIFTF VDDLLGLVKR PFMKSQKDVA
DGESVNG
|
|---|
| |