| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7438 |
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| Symbol | |
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| ID | 7380466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 405413 |
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| End bp | 406807 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643641494 |
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| Product | ABC transporter substrate-binding protein |
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| Protein accession | YP_002539791 |
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| Protein GI | 222102752 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGACG GGTGTGTGGC ATTAACGGTC GGCGGATGCG GGCTTTGCTG CCGACGGCTA
CCGCATTCAG ACAGAGCTCA ACGCGCGGGG AGGCGCATGG CAATGGGACG ACCGATATTC
ACCAGACGTG ATTTTATCAA GACAACCGCC GTCAGTGGCG CTGTGCTTGC AACCTCGGGC
TTGGCCGCGC CAGCGATTGC CAAGGATGTG GCCATCAAAC TTGGCTATGT CAGCCCCCAG
ACTGGCCCAC TCGCGGGCTT CGGCGAAGCC GACAAGTTTG TCATCGATGC GTTTATGACA
GCAACCAAAG CCATGGGCCT CAACTATCAG GTCATCGTCA AGGACAGCCA GTCAAACCCC
AACCGGGCCG CTCAAGTGGC CAAGGAATTG ATCGTCGATG ACGAGGTCAA TTTGATGCTG
GTCTCCTCGA CGCCCGAAAC GACCAATCCT GTCTCAACCA CCTGCGAGGG GGAAGGTGTG
GCGTGTATTT CCACTGTCGC ACCCTGGCAA TCCTGGTTCA TCGGTCAGCA AGGCAATCCC
TCCGATCCTG CAAGCTGGAA GCCGTTTAAT TATGCCTACC ACTTCTTTTG GGGGCTGGAA
GATATCATCG CGGTTTACAC CGGCATGTGG AGCCAGCTTG CGACCGACAA AAAGGTCGGC
GGCCTGTTTC CCAATGATGG CGATGGCAAT GCCTGGGGCG ACAAGGTTGT CGGCTTCCCG
CCGGTTCTTG AAAAGCTTGG CTATTCACTG ACGGACACCG GGCGCTACCA GAATCTGACG
GATGATTTTT CTGCCCAGAT CAACGCCTTC AAGCAGAAGA ACACCGATAT TCTGACCGGA
GTGATGATCC CGCCGGATCT CACCACATTC TGGAATCAGG CCAAACAGCA GGGATTGAAG
CCGAAGATCG CCTCCATCGG CAAAGCGCTG CTGTTTCCGC AAGCCGTGGA AGCGCTCGGC
AATGCCGGTC ACAACCTCTC CACGGAAGTC TGGTGGACAC CAACGCATCC GTTTAAATCC
TCGCTCACCG GCCAAACGTC GGCCCAGGTC GCGGCGGCCT TCACCAAGGC AACAGGGCGT
CCCTGGACGC AGCCTATCGG CTTTGCCCAT GCGCTTTTCG AACTCGCCGT CGATGTGATG
AAGCGGGCCG AGGATGTGAG CGACGCCAAC TCTGTAGCCA AAGCGATTGG TGAAACCAAG
CTCGACACAC TGGTCGGCCC CATTGCCTGG GGCAGCGACA AGCTGCCGCC GTTTGCCAGC
AAGAATGTGG CCAAGACCCC GCTGGTCGGG GGTCAATGGC GGCTCAAGAC CGGCGGCGGC
TATGACCTTG TGGTGGTCGA AAACGGCCTC ATTCCGTCTG TGCCGCTGGG CGGCAAGCTC
GAACCTCTCG CGTGA
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| Protein sequence | MKDGCVALTV GGCGLCCRRL PHSDRAQRAG RRMAMGRPIF TRRDFIKTTA VSGAVLATSG
LAAPAIAKDV AIKLGYVSPQ TGPLAGFGEA DKFVIDAFMT ATKAMGLNYQ VIVKDSQSNP
NRAAQVAKEL IVDDEVNLML VSSTPETTNP VSTTCEGEGV ACISTVAPWQ SWFIGQQGNP
SDPASWKPFN YAYHFFWGLE DIIAVYTGMW SQLATDKKVG GLFPNDGDGN AWGDKVVGFP
PVLEKLGYSL TDTGRYQNLT DDFSAQINAF KQKNTDILTG VMIPPDLTTF WNQAKQQGLK
PKIASIGKAL LFPQAVEALG NAGHNLSTEV WWTPTHPFKS SLTGQTSAQV AAAFTKATGR
PWTQPIGFAH ALFELAVDVM KRAEDVSDAN SVAKAIGETK LDTLVGPIAW GSDKLPPFAS
KNVAKTPLVG GQWRLKTGGG YDLVVVENGL IPSVPLGGKL EPLA
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