| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7416 |
|---|
| Symbol | |
|---|
| ID | 7380448 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | - |
|---|
| Start bp | 388188 |
|---|
| End bp | 389435 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643641476 |
|---|
| Product | Permeases of the major facilitator superfamily |
|---|
| Protein accession | YP_002539773 |
|---|
| Protein GI | 222102734 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2223] Nitrate/nitrite transporter |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0651373 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGCTGT TTCCATTTCA TTCTCCACAT CCTCGGTATG GCCGAGCCAT CCTGGCCGCA
TGCTCGCTTA TCCTATGCAT GAACGCCGCG TTTCCCATCT ACGGCGCAAG CGTGATCAAC
ACATCCATGG TCACATCATT GGGCTGGGAT CGCAGCCTCC TCGGGCTGCT CGTGTCCGTC
AACATGGCCG TTACCGGCAT TACAGCGCCG CTCGTCGGAT CCGCAGTCAA TCGCTTTGGT
TCGCGCCTCG TGCTGATCGC AGGCAGCCTG TTACTGCTGC TTGGAGCGAG CGCAATGGCT
TTCTGGGTTG AAAAGCCCTG GCAGGTCGTC GTTGCATTTG GCATCCTCAT GGGATTGGCC
ATGAGTGCTG GTGGTTTCGT TGCCAATCAG GCTTGTGTCG CAGCCTGGTT TGATAAAAAG
CGGGCTCGGG CCTTTGCGGT TCTCTATGCC ACTATGGGCG TTGGCGGTTT TGTTGCTGCA
CCGCTGATCA GTCGGTCCAT TGCCCTTAGC GATTGGCGTG CCGGATGGCT CGTCTTCATC
GGTGCCGGAG CCTTGGCTTT GTTTCTGGCA ATCTTCGTTG TGCGCGATAC GCCACCGGGC
GCAAGCGATG CCAATGTCGC GAAATTCGCA CAATTCGATG CTTCAGGAGA CCAGAAGGGA
TCGGTCTATA AATCGCCGGC ACTGTGGCTG GTGATCACAT GCATTGTCAC GGCTGGTGCC
GGATGTTCAT TCTATATCGC CCATGGCCTG GCGCTTCTGC ATGATTCCAG CTTTGCTCCG
ACGGATGCTG CAGCATCACT ATCGCTGATG GCCGCCTCGA CCTTGCTGGG CAACTTCGCC
GTTGGAGCCT TCAGTGAGCG TTTGGGAACC CGCAATATTC TCGCGGCTGG CCTTCTTGTC
TTTTCTTTGG GTATATTGAC ACTCGGTTAC GCTCATAATT CAATCATGCT CTATGCCTAT
GCCGTCTTGT TGGGCGCGGG CTATGGTGCG GTGCAGGTAA GCTCAATGGC CCTGCTGAGC
GAAACCTTTG ATTCACGGCA TTTTGCTGCG GTCTCCGGCT TTGCCATTTC AATGATGACG
ATCGCAAGCG CTGTTGCGCC AATCGTCGTC GGACAGTTGT TCGATCACAC CCATACCTAT
ATGCCAAGTG TCCTGACCAT TGCCGCGCTG AATGGTATTG CCGCAGTGCT GATGGCAACC
AATCGTCGGG CTTTTTTGTC CGGCACCCCC CAGGTACACG CCACCTAA
|
|---|
| Protein sequence | MRLFPFHSPH PRYGRAILAA CSLILCMNAA FPIYGASVIN TSMVTSLGWD RSLLGLLVSV
NMAVTGITAP LVGSAVNRFG SRLVLIAGSL LLLLGASAMA FWVEKPWQVV VAFGILMGLA
MSAGGFVANQ ACVAAWFDKK RARAFAVLYA TMGVGGFVAA PLISRSIALS DWRAGWLVFI
GAGALALFLA IFVVRDTPPG ASDANVAKFA QFDASGDQKG SVYKSPALWL VITCIVTAGA
GCSFYIAHGL ALLHDSSFAP TDAAASLSLM AASTLLGNFA VGAFSERLGT RNILAAGLLV
FSLGILTLGY AHNSIMLYAY AVLLGAGYGA VQVSSMALLS ETFDSRHFAA VSGFAISMMT
IASAVAPIVV GQLFDHTHTY MPSVLTIAAL NGIAAVLMAT NRRAFLSGTP QVHAT
|
|---|
| |