| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7378 |
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| Symbol | xylF |
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| ID | 7380418 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 353313 |
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| End bp | 354359 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643641446 |
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| Product | ABC transporter substrate binding protein (xylose) |
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| Protein accession | YP_002539743 |
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| Protein GI | 222102704 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.263003 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTTC ATTCCATGAT GATGGTGTCG GTTGCTGCCG CTGCCATGTT TGCAGGCTCT
GCCTTGGCGC AGGAGAAGGC AACGGTTGCG TTTCTGATGC CCGATCAGGC ATCGACACGC
TATGAAAACC ACGATTTTCC GGGCTTCAAG GCAGAAATGG CCAAGCTGTG CGCCGGATGC
ACGGTGATTT ATCAAAACGC CAATGGCGAT ACCGCACTTC AGCAACAGCA ATTCAACTCA
GTGATTGCGC AAGGCGCAAA GGTGATTGTG CTGGACCCGG TGGATTCGTC TGCTGCCGCA
GCACTGGTCG AATTGGCGCA GTCGCAGGAT GTGAAGGTGA TTGCCTATGA CCGTCCTATT
CCCAAGAAAG CAGCGGATTA TTACGTCTCC TTCGACAATG CTGGCATTGG CGAGGCTATT
GCCAAGTCTT TGGTGGAGCA CCTGAAGGCC AAGGGCGTGC CGCAGGGTTC TGGCATTCTT
CAAATCAACG GTTCGCCCAC CGATGCCGCC GCTGGCCTGA TCCGCGATGG TGTTCATAAA
GGCCTGAAGG ATTCTGGCTA CAAAACACTG GCTGAATTCG ACACGCCGGA ATGGGCACCA
CCAAAGGCGC AGGAATGGGC GGCAGGTCAG ATCACCCGTT TTGGCGCAGA CATCAAGGGC
GTTGTTGCCG CCAATGACGG CACAGGCGGC GGTGCGATTG CGGCCTTCAA GGCGGCTGGT
GTTAATCCGG TGCCACCCGT TACCGGCAAT GATGCGACCA TTGCAGCACT TCAGCTGATC
ATTTCCGGCG ACCAGTACAA CACGATTTCC AAGCCATCGG AAATTGTTGC GGCGGCGGCT
GCCAAAGTCA CCGTTCAGTT TCTGAAGGGC GAAAAGCCGG AAGCCAAGAC CACGCTGTAT
GACACCCCCT CGCAGCTGTT CATTCCGGCT GTTGTGACGG CAGAAAACAT CAAGGCAGAA
ATCTTTGACA AGAAGATTCA GACGCCTGCC GAAGTCTGCA CGGGTGAATA TGCCACTGGC
TGCAAAAAGC TGGGCATCAC CCAGTAA
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| Protein sequence | MKFHSMMMVS VAAAAMFAGS ALAQEKATVA FLMPDQASTR YENHDFPGFK AEMAKLCAGC
TVIYQNANGD TALQQQQFNS VIAQGAKVIV LDPVDSSAAA ALVELAQSQD VKVIAYDRPI
PKKAADYYVS FDNAGIGEAI AKSLVEHLKA KGVPQGSGIL QINGSPTDAA AGLIRDGVHK
GLKDSGYKTL AEFDTPEWAP PKAQEWAAGQ ITRFGADIKG VVAANDGTGG GAIAAFKAAG
VNPVPPVTGN DATIAALQLI ISGDQYNTIS KPSEIVAAAA AKVTVQFLKG EKPEAKTTLY
DTPSQLFIPA VVTAENIKAE IFDKKIQTPA EVCTGEYATG CKKLGITQ
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