| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7241 |
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| Symbol | nocM |
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| ID | 7380391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 202667 |
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| End bp | 203359 |
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| Gene Length | 693 bp |
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| Protein Length | 230 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643641338 |
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| Product | ABC transporter membrane spanning protein (nopaline) |
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| Protein accession | YP_002539635 |
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| Protein GI | 222102596 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4160] ABC-type arginine/histidine transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0228007 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGATT TTGGGTTTTT CTTTGAGATC ATTCCAAAAC TGCTGTCGGG GCTGCCTCTG
ACCTTGACGC TCGCTGGCAC CTCGATCGTC TGTGGCTTTG TTCTTGCCCT CGTGCTGGCC
CTTGTGCAAC AGGGCGAACG GCGGTGGGTT GTCTGGCCAG TTCGCACCTT CGTCGCGGTT
TTTCGGGGCA CGCCGCTGCT CGTCCAGATC TTTTTGATTT ACTATGGCCT TGGACAGTTC
CGCCCTTCGT TGCAGGCGGC CGGCCTTTGG TGGCTGTTCC GTGAACCCTA TTGGTGCGCG
ATATTGGCGC TCACCCTGAA CACCGCAGCC TATGGCAGCG AAATTCTGCG CGGTGCGATC
CGCAATGTGC CCAGAGGGCT GATTGAGGCC GCCTCCGCGC TCGGGATGTC GCGGCTTGCC
AACCTGCGCT TCATCATCCT GCCGCTGGCT CTGCGCCAGG CCATCCCGGC CTATGGCAAC
GAGATCATTC TGATGGTCAA GGGCACGTCG CTGGCGTCAA TTATCACATT GATGGAGGTG
ACTGGCATAG CGCAGGGGCT TATTTCCCAA AGCTATCGCG CCATTGAGGT CTTCATGGCC
GCAGGGGCGA TCTATCTGCT GCTCAATTTC ATCATCGTGC GGGCGCTCAC CACGCTCGAA
GCCAGACTGA CACTGTATCG GACCCGCAGC TGA
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| Protein sequence | MIDFGFFFEI IPKLLSGLPL TLTLAGTSIV CGFVLALVLA LVQQGERRWV VWPVRTFVAV
FRGTPLLVQI FLIYYGLGQF RPSLQAAGLW WLFREPYWCA ILALTLNTAA YGSEILRGAI
RNVPRGLIEA ASALGMSRLA NLRFIILPLA LRQAIPAYGN EIILMVKGTS LASIITLMEV
TGIAQGLISQ SYRAIEVFMA AGAIYLLLNF IIVRALTTLE ARLTLYRTRS
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