| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7181 |
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| Symbol | |
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| ID | 7380343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 147070 |
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| End bp | 148698 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643641291 |
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| Product | ABC transporter substrate binding protein (oligopeptide) |
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| Protein accession | YP_002539588 |
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| Protein GI | 222102549 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.219647 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGTCA ACCGCCCGTC TACCGAACAC GCCGCCCATT CCACAACCCG TCGCGGCTTT
CTGCTGGCAT CGGCAGCAGT CAGCGCATTT GCTGTGAGCG GCACAAATTT GCGCGCCGCA
ACGCCGGCAA AGGGTGGCAC GGCAACGCTG CTTTTGTCGT CTGAGCCTCC GGTTTTGACC
ACCATTGCCC ATACCGCGTT CAACTCGGTC TATGTCTCGC CAAAGGTCAC CGAGGGGTTG
CTGACCTATG ATTTTGACCT CACGCCTAAG CCCTTGCTGG CAACTGAATG GCAGATCAGC
CCGGACGGGC TGAAATATAC GTTCAAACTG CGCGATGGGG TGAAATGGCA TGATGGCAAG
CCCTTCACCT CGGCAGATGT GGCGTTTTCC ATCAAAACCA TTGCCCAAGT CCATCCGCGT
GGGCGCAACA CATTCCTCAA TTTGACGGAA GTGGAAACCC CGGATGCACG CACGGTGGTG
CTCGTGCTGT CCAAGCCAGC CCCCTATCTC ATCACCGCCC TTGCCTCTTC CGAGACGCCG
ATTGTACCAA AGCATCTCTA TGAAGGCACC AAAGTGCAGG AAAACCCGGT CAATCTTGCC
CCTGTTGGCA CCGGCCCCTA CAAGTTCAAG CAATGGGTGC GCGGCAGCCA TATCGTTTAT
GTCCGCAATG AGGACTATTG GGACAAGCCC CGCCCCTATC TCGACAGCCT GATCGTGCGC
TTCATCTCGG ATTCGGCAGC GCGGTCGATT GCGATTGAGG CGGGTGAGAT TGATCTGGCG
CCAAGCACAC CGGTGTCCTA CGGCGACCTG GATCGGTTGA AAGCCTTGCC GCATATCGGC
TTTGAAACGC AGGGCTACCA ATACTCCAAC GGTGTCACGC GGGTTGAATT CAATCTGGAA
AAAGAGTTTT TCAAGGATGT GCGGGTGCGC CGCGCCTTCG CTCATGTGAT TGATCGCAAT
GTGATTTTCA ACACGGTCAA TTACGGCTAT GGCGCGCCGA TTACCGGCCC CATCAATCCC
AAACTGTCAA AATGGTATGT TTCGGACCTG AAGACCTATC CCATTGATCT CAAAGCAGCG
GAAGCCCTGC TGGATGACGC TGGCTATAAG CGTGGGCCAG ATGGCATTCG CGCCCGCCTC
AAACTCGATT ATGTACCGGG TGAAGGCTAT CCGCGTGGCG CGGATTATAT TCGTCAAGCA
CTGGCCAAGG TGGGCATTGA GGTCACAGTG CGCACACAGG ATTTCGCCAC CTATACCAAA
CGCATCTACA CTGACCGTGA TTTCGATTTT GCCTATGAAG GCATGAGCAA TCTGTTTGAT
CCCACCGTGG GTGTACAGCG GCTTTATTGG AGCAAGAACT TCCTAAAAGG CGTGCCTTTC
TCCAATGGTG CGGCCTATAG CAACCCGAAA GTCGATGCCC TGCTGGAAGC AGCAGCGGTG
GAGATTGATC CGAAAAAGCG CGTGGCGCAG TGGAAGGAAA TCCAGCAGAT TCTGGTGGAG
GATGTGCCTG CCATCGATAT CGCTGCGGCT CCCGAAATCA CCATTTATAA CAAGCGTATC
GCCGATCACA CGCTGGGCGC GGAAGGCATC ATCAGCAGCC TCGCCTTCGC CTATATCGCG
TCAACGTAA
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| Protein sequence | MIVNRPSTEH AAHSTTRRGF LLASAAVSAF AVSGTNLRAA TPAKGGTATL LLSSEPPVLT
TIAHTAFNSV YVSPKVTEGL LTYDFDLTPK PLLATEWQIS PDGLKYTFKL RDGVKWHDGK
PFTSADVAFS IKTIAQVHPR GRNTFLNLTE VETPDARTVV LVLSKPAPYL ITALASSETP
IVPKHLYEGT KVQENPVNLA PVGTGPYKFK QWVRGSHIVY VRNEDYWDKP RPYLDSLIVR
FISDSAARSI AIEAGEIDLA PSTPVSYGDL DRLKALPHIG FETQGYQYSN GVTRVEFNLE
KEFFKDVRVR RAFAHVIDRN VIFNTVNYGY GAPITGPINP KLSKWYVSDL KTYPIDLKAA
EALLDDAGYK RGPDGIRARL KLDYVPGEGY PRGADYIRQA LAKVGIEVTV RTQDFATYTK
RIYTDRDFDF AYEGMSNLFD PTVGVQRLYW SKNFLKGVPF SNGAAYSNPK VDALLEAAAV
EIDPKKRVAQ WKEIQQILVE DVPAIDIAAA PEITIYNKRI ADHTLGAEGI ISSLAFAYIA
ST
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