| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7169 |
|---|
| Symbol | |
|---|
| ID | 7380334 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | - |
|---|
| Start bp | 136667 |
|---|
| End bp | 137269 |
|---|
| Gene Length | 603 bp |
|---|
| Protein Length | 200 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643641282 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002539579 |
|---|
| Protein GI | 222102540 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain
[TIGR01926] uncharacterized peroxidase-related enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.360229 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA CCATTATCGA CCCCAAGGTG GAAAACGCCC CCAATGTCTT CACGCAAGAC
CAGATCGGCT GGACACCATG GCTTGAACCA TTGACCGAGA CTGAGCTGAC CGAGCGCCAC
TACGAAGCGC TGGTGGACAA GGCACGGGCG AAATCGCCCT ATTTCTCTCT TCTGGTGCGC
GATCCCGATA TTCTGGAAGC CCGCACCAAG ACAGATAAGG ATATTTTCTA CAACACCGCC
GATGGCCTGC CCCGCGCCGA GCGCGAACTG AGCGCCACCG CCACATCGCG CTATAACGGC
TGCATCTTTT GCGCCTCCGT CCATTCCCGC TTCGCATCGC ACCACTCACC GCGCAAGGAT
GATGTGCAAA AACTGCTGGA TGAAGGCGTG GGGGCTGATC TGGATGAACG TTGGAACGCA
ATTGTCAGCG CCTCTGTTGC ATTAACCGCC ACCCCGCCCG TGTTTGCGAC TACCCATGTG
GAGCGGCTTC GCGCCGCCGG TCTTTCCGAT GACGAGATCT ATGATGTCGT GCATGGCGCG
GCCTTCTTCA ACTGGGCAAA CCGCTTGATG CTCTCGCTGG GCGAGCCAAC GCCAGCGGCT
TGA
|
|---|
| Protein sequence | MTDTIIDPKV ENAPNVFTQD QIGWTPWLEP LTETELTERH YEALVDKARA KSPYFSLLVR
DPDILEARTK TDKDIFYNTA DGLPRAEREL SATATSRYNG CIFCASVHSR FASHHSPRKD
DVQKLLDEGV GADLDERWNA IVSASVALTA TPPVFATTHV ERLRAAGLSD DEIYDVVHGA
AFFNWANRLM LSLGEPTPAA
|
|---|
| |