Gene Avi_7000 details

Gene Information

• Locus tag: Avi_7000
• Symbol: repA
• ID: 7380202
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011981
• Strand: +
• Start bp: 70
• End bp: 1296
• Gene Length: 1227 bp
• Protein Length: 408 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 643641155
• Product: replication protein A
• Protein accession: YP_002539452
• Protein GI: 222102413
• COG category: [D] Cell cycle control, cell division, chromosome partitioning
• COG ID: [COG1192] ATPases involved in chromosome partitioning
• TIGRFAM ID: [TIGR03453] plasmid partitioning protein RepA

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGTTTTG ACATGGCGAA AATCGCCCCG AAAACTGATG CCGTGATTGA GGGGTTGACT 
GCCTTGATGG AGCGTCACGC TGACGCGCTT TCCAGCCAGT TGCAAGCACA TCATTTGAAA 
GTTTTCCCGC CGACCTCCGA AAAGGGGATT AGGTCCTTCG GCCCGTCTGA AGCGTCCAAG 
TTGCTTGGCG TTGGGGAGTC TTATCTACGA CAGATTGCTT CGGAAATGCC AGAGTTGAAT 
GTCAGCATGA GCCCTGGGGG CCGGCGCATT TTCTCGATTG AAGATATACA CGTGATCCGC 
AAACATATGG ACCAGATTGG TCGTGGAAAC CGTCGCTATC TTCCGCATCG TCGAGACGGG 
GAGCAGCTTC AAGTCATTTC TGTTATGAAT TTCAAAGGTG GCTCGGGCAA AACGACGACC 
GCTGCGCATT TGGCTCAATA TCTCGCAATG CGTGGTTACC GAGTGCTTGC TATCGATCTC 
GATCCTCAGG CAAGCCTGTC TGCGCTCTTT GGCAGCCAAC CGGAGACGGA TGTCGGTCCA 
AACGAGACTC TCTATGGCGC CATCAGATAT GATGATGAGC AAGTGCCGAT CGAACAGGTC 
GTTCGGGGAA CATATATTCC GGATCTTCAT CTCATTCCCG GCAATCTCGA ACTTATGGAA 
TTTGAGCATG ACACTCCCCG CGCCTTAATG AAGCGCAAGG AAGGCGATAC GCTCTTCTAT 
GGCCGCATCA GTCAAGCGAT TGAAGACATT GCAGATAATT ATGATGTCGT CGTCATCGAT 
TGCCCTCCGC AACTTGGTTA CCTCACGCTT TCAGCATTGA CGGCTGCAAC ATCTATCCTT 
GTTACGGTTC ATCCCCAGAT GCTCGATGTG ATGTCAATGA ACCAGTTTCT GGCAATGACC 
TCGAACTTGT TGAGGGAAAT TGAGAGCGCC GGCGCTGAGT TCAAGTTCAA TTGGATGCGT 
TATCTTATCA CTCGTTTCGA GCCGAGTGAT GGACCACAAA ATCAAATGGT TGGCTATCTC 
AGGTCTATTT TCGGTGAGAA CGTCCTCAAT TTTCCAATGC TCAAAACGAC GGCTGTCTCA 
GACGCGGGCC TGACAAACCA AACCCTTTTT GAAGTGGAAC GCGGTCAGTT TACCCGATCA 
ACCTATGATC GCGCCTTGGA GGCTATGAAC GCTGTCAATG ATGAGATTGA ATCTCTTATC 
AAAAAAGCAT GGGGTAGAAC CACATGA 

 

Protein sequence

MGFDMAKIAP KTDAVIEGLT ALMERHADAL SSQLQAHHLK VFPPTSEKGI RSFGPSEASK 
LLGVGESYLR QIASEMPELN VSMSPGGRRI FSIEDIHVIR KHMDQIGRGN RRYLPHRRDG 
EQLQVISVMN FKGGSGKTTT AAHLAQYLAM RGYRVLAIDL DPQASLSALF GSQPETDVGP 
NETLYGAIRY DDEQVPIEQV VRGTYIPDLH LIPGNLELME FEHDTPRALM KRKEGDTLFY 
GRISQAIEDI ADNYDVVVID CPPQLGYLTL SALTAATSIL VTVHPQMLDV MSMNQFLAMT 
SNLLREIESA GAEFKFNWMR YLITRFEPSD GPQNQMVGYL RSIFGENVLN FPMLKTTAVS 
DAGLTNQTLF EVERGQFTRS TYDRALEAMN AVNDEIESLI KKAWGRTT