Gene Tgr7_0953 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTgr7_0953 
Symbol 
ID7314984 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThioalkalivibrio sp. HL-EbGR7 
KingdomBacteria 
Replicon accessionNC_011901 
Strand
Start bp1030388 
End bp1032058 
Gene Length1671 bp 
Protein Length556 aa 
Translation table11 
GC content70% 
IMG OID643615838 
Productlytic transglycosylase, catalytic 
Protein accessionYP_002513028 
Protein GI220934129 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCCCA TCCGTTTCAT GGTCATCGCC GCGCTGCTGC CCGCGGCCCT CTTGCTGAGC 
GCCTGCGGCA GCCTCCCCTC TCAACCCGAT GAACCGGAAC GGGTTGAAAT CACTGAAGAA
ACCGACACCG TACGACTGGC GGACGCCGAG CAGACCCTGC TCGGCCTGGA GGAAGCAACC
CCCTTCCCCG ACCTGACCCC CTCCCGGGAC ATCCCCGTGG GCGAGAGCCC GCCCAGCGAG
GACATCTGGG GCCGGGTGCG CGCCGGCATG GGTATGCCCG ATTACCGCCA CCACCCCAGC
GTCCAGCCCC ACATCCAGTG GCACCTGTGC CGCCCCGACT TCATCCAGCG GGTGACCGCC
CGGGCGGAAC CCCTGCTGCA CTACATCCTG GAAGAGATCG AGGCCCGGGA CCTGCCCACG
GAGCTGTTGC TCCTGCCCAT CGTGGAAAGC GCCTACCTGC CCTTCGCCTA TTCCCACGGC
CGCGCGGCGG GCATCTGGCA GTTCATCCCC TCCACCGGGC GCCACTTCGG CCTGAAGCAG
AACTGGTGGT ATGACGGGCG CCGCGATATT CACGCCTCCA CCACCGCCGC CCTGGACTAT
CTGCAGCAGC TCAACCAGCG CTTCGACGGC GACTGGCTGC TGGCGCTCGC CGCCTACAAC
GCCGGCCAGG GCACCGTGGC CCGGGCCATC CAGCGGAACG AACGCCTGGG CCGCCCCACG
GACTTCTGGA GCCTGGACCT GCCCCGGGAG ACCCGCCAGT ACGTGCCCAA GCTGCTGGCC
CTGCGCAGCC TGGTGGAAGA CCCCTGGGCC TACCACGTGG AACTCTGGCC GGTGCCCGAC
GAGCCCTACC TGGAACTGGT GCAGCTGGAC GGCCAGCTGG ACCTCGCCGT GGCGGCGCGC
CTGGCGGACC TGGACCTGGA AGAGGTCTAC CAGCTCAACC CGGGCTTCAA CCGCTGGGCC
ACCGATCCTG AAGGCCCCCA CCACCTGCTG CTGCCCCGCG ACCGCACACC GGCCTTCCGC
GAGGGTCTGG CCGCGCTGGA TGCCTCCGAG CGGGTGGTCT GGAACCGCCA CCGCATCCAG
GAGGGCGAGA CCCTGATCCA GATCGCCCGC CAGTACCGCA CCACCGTGGC CATGCTGCAG
AGCACCAACA ACCTCCGCGG CAGCAACATC CGCGCAGGCC AGTACCTGCT GGTGCCGAGC
GCCAGCGAAC CGGCCTCCAC CTACACCCTG ACGGCCGACC AGCGCCGCAC CCAGACCCAG
GCGCGCGGGC CGGCCGGCCG GGTACAGCAC CAGCACCTGG TCCAGGCGGG CGACACCTTC
TGGGGCCTGT CCCGGCGCTA CAACGTCTCG GTGCAGGAAC TGGCCCGCTG GAACGGCATG
GCCCCCGGCG ACACCCTGCG CCCGGGCCAG CGCCTGTCCG TGTGGCTGAG CAGCGACGCC
GGTCCGGTGG CCTCGGCGGG TCCGCCGCAG TTGCAGAACC CGGCCGCGCG GCGCCAGACG
GTGAACTATG CCGTGCGCCC CGGGGACTCC CTGGCAAGCA TCGGCCAGCG CTTCCAGGTC
AGCGTGGCTG ACATCCGCCG CTGGAACAAC CTGGGCAACG GCAATCTGAT CCGCCCCGGA
CAGACCCTGA CCCTGCACGT GGACGTCACC AACCAGGGCG GCGGGGCATG A
 
Protein sequence
MNPIRFMVIA ALLPAALLLS ACGSLPSQPD EPERVEITEE TDTVRLADAE QTLLGLEEAT 
PFPDLTPSRD IPVGESPPSE DIWGRVRAGM GMPDYRHHPS VQPHIQWHLC RPDFIQRVTA
RAEPLLHYIL EEIEARDLPT ELLLLPIVES AYLPFAYSHG RAAGIWQFIP STGRHFGLKQ
NWWYDGRRDI HASTTAALDY LQQLNQRFDG DWLLALAAYN AGQGTVARAI QRNERLGRPT
DFWSLDLPRE TRQYVPKLLA LRSLVEDPWA YHVELWPVPD EPYLELVQLD GQLDLAVAAR
LADLDLEEVY QLNPGFNRWA TDPEGPHHLL LPRDRTPAFR EGLAALDASE RVVWNRHRIQ
EGETLIQIAR QYRTTVAMLQ STNNLRGSNI RAGQYLLVPS ASEPASTYTL TADQRRTQTQ
ARGPAGRVQH QHLVQAGDTF WGLSRRYNVS VQELARWNGM APGDTLRPGQ RLSVWLSSDA
GPVASAGPPQ LQNPAARRQT VNYAVRPGDS LASIGQRFQV SVADIRRWNN LGNGNLIRPG
QTLTLHVDVT NQGGGA