Gene Tgr7_0232 details

Gene Information

• Locus tag: Tgr7_0232
• ID: 7316810
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thioalkalivibrio sp. HL-EbGR7
• Kingdom: Bacteria
• Replicon accession: NC_011901
• Strand: +
• Start bp: 250594
• End bp: 251151
• Gene Length: 558 bp
• Protein Length: 185 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 643615117
• Product: general secretion pathway protein H
• Protein accession: YP_002512318
• Protein GI: 220933419
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR01708] general secretion pathway protein H; [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGATCCCCT CGTCCGCCCA TCGGGCCGCG CTGCGCACCC CGCAGCGGGG CTTCACCCTC 
ATCGAAGTAA TCGTGGTGGT GTTCATCGTG GGCATCATGG CCAGCTTCGC GGTGATCAGC 
ATGGGCGGCG GCGGGCAGGA CCGGGTGGTG GAGCAGGAGG CCCGCCGGGT CACCGCGCTG 
CTTGAGCTGG TGCGCGACGA GGGCATCCTC AGCGCCCGGG AGCAGGGCCT GGGCTTCACC 
GAACATGCCT ATGTCTTCCT GCGCCGTTAC CGGGTGGGCG ACCGCACCTA TGAATGGCTA 
CCCGTGGAAG ACGACCAGAC CCTGCGCCGG CGGGACCTGG AAGACCTGGG GATCTCTTTC 
GCCCTGTACG TGGAGGGCAC CCGGGTGAGC CTGCTCCGGG ATGTCGAGAA CCCGGGCGTT 
CAGGTCATTC TCGGCCCCAG TGGGGAGCTG ACCGCCTTCG AACTGGAGAT CATCACCGAG 
GGGGCGCGGC AGGCCTCGTG GGTGGTGCGC GGCCTGCCCG GCGGGCGCAT CGAGCTGCGC 
CGGGGCGCTC GTACATGA 

 

Protein sequence

MIPSSAHRAA LRTPQRGFTL IEVIVVVFIV GIMASFAVIS MGGGGQDRVV EQEARRVTAL 
LELVRDEGIL SAREQGLGFT EHAYVFLRRY RVGDRTYEWL PVEDDQTLRR RDLEDLGISF 
ALYVEGTRVS LLRDVENPGV QVILGPSGEL TAFELEIITE GARQASWVVR GLPGGRIELR 
RGART