| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_23560 |
|---|
| Symbol | |
|---|
| ID | 7314239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothermothrix orenii H 168 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011899 |
|---|
| Strand | - |
|---|
| Start bp | 2574658 |
|---|
| End bp | 2576049 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643612808 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_002510096 |
|---|
| Protein GI | 220933188 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.690968 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGGGT TAACAGATGA TACTATTGCA GCTATTTCTA CACCTTTCGG GACTGCCGGT
ATTGGTAAAA TCAGGGTCAG CGGGTCTGGG GCTATAGATG TAGCTGACAG GATTTTTAAA
GGAGTTAAAG ATAAAAGTTT AAAGAATGTC AATACCTATA CAGCTCACTA CGGTTATGTT
GTTGAGCCTG AATCCGGTAA AATGGTTGAC GAGGTTATTG TTATTGTAAT GAGGGGTCCC
CATTCTTTTA CCGGTGAAGA TGTAGTTGAG TTTGACTGCC ACGGGGGTAT GATTCCTTTA
AAGAAAGTAC TTGAGGTCTT ATTAAATAAT GGGGCCCGCC TGGCAGAACC CGGGGAGTTT
TCAAAAAGGG CATTTTTAAA TGGCAGGATT GATCTGGCCC AGGCTGAGGG AATTATGGAG
GTTATAAATT CAAAAACAGA TAAAGGATTA GATGTGGCCA TAAATCATTT AACCGGAAAG
CTTTCAAATA AAATTACTGG AATTAAAAAT GAGGTTATTA GACTCCTGGC TCATCTTGAA
GCCGCTATAG ATTTTCCGGA AGATGAAATT GAAGGCTTCG AACCTGATGA ACTGGGTAAC
AGGATAAATG GTATAAAGGA TGAAATTGAA GATTTACTGG CAACAAGTGA TCAGGGTAAA
ATATATCAGG AAGGTTTAAA GGCTGTAATT GTGGGAAAAC CCAATGTCGG TAAATCGAGC
CTTTTAAACT CCCTTGTTCA GGAAAACAGG GCCATTGTTA CTGATATACC CGGTACTACC
AGAGATATAA TAGAAGAGTA TATAAATATA AGAGGTATCC CTTTAAGGAT AATAGATACA
GCCGGAATCA GGGAGACCCG GGATATGGTT GAAAAGATCG GGGTTGAAAA AACCCGTAAT
TCCCTGAGGG AGGCCGATCT CGTCCTTTTT ATGCTTGATG TAGCCCAGGG GTTGACTGAA
GAAGATATAA AAATATATGA TATGGTTAAA GATAAACCGA TGATTGTTCT TGTTAATAAG
ACAGACCTGG ACAGGGAAAT AGATGAAAAG AAAATTAAAG ACCATTTTAA AGAACACCCG
CTACTCTGGA TTTCTGTTAA AGAAGAAATA GGGCTTGATA ACCTTAAAGA GGCTATTATT
GAGGAAGTAG TTTCTGAGGA GGTTAACGTT TCAGATAATA TCTTTATAAC CAGGGTCAGG
CATAAAGATG CTATGAAGAA AGCTGTTCAT AGTATTAACA GGGTAAAAGA ATCTTTAAAC
CAGGGGTTAC CCTATGATTT CCTTACTATA GACCTTAAAG ACTGTCTTGA TGCTCTGGGT
GAGATTACTG GAGAGACGGT TACTGAGGAT ATTATTGATC GGATTTTTGC TGATTTTTGT
CTTGGTAAAT AA
|
|---|
| Protein sequence | MKGLTDDTIA AISTPFGTAG IGKIRVSGSG AIDVADRIFK GVKDKSLKNV NTYTAHYGYV
VEPESGKMVD EVIVIVMRGP HSFTGEDVVE FDCHGGMIPL KKVLEVLLNN GARLAEPGEF
SKRAFLNGRI DLAQAEGIME VINSKTDKGL DVAINHLTGK LSNKITGIKN EVIRLLAHLE
AAIDFPEDEI EGFEPDELGN RINGIKDEIE DLLATSDQGK IYQEGLKAVI VGKPNVGKSS
LLNSLVQENR AIVTDIPGTT RDIIEEYINI RGIPLRIIDT AGIRETRDMV EKIGVEKTRN
SLREADLVLF MLDVAQGLTE EDIKIYDMVK DKPMIVLVNK TDLDREIDEK KIKDHFKEHP
LLWISVKEEI GLDNLKEAII EEVVSEEVNV SDNIFITRVR HKDAMKKAVH SINRVKESLN
QGLPYDFLTI DLKDCLDALG EITGETVTED IIDRIFADFC LGK
|
|---|
| |