Gene Hore_12950 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHore_12950 
Symbol 
ID7313616 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothermothrix orenii H 168 
KingdomBacteria 
Replicon accessionNC_011899 
Strand- 
Start bp1389443 
End bp1390585 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content37% 
IMG OID643611735 
ProductUroporphyrinogen-III decarboxylase 
Protein accessionYP_002509040 
Protein GI220932132 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0407] Uroporphyrinogen-III decarboxylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.00000558347 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGGATGA CATCACGGGA AAGAATTATG GCTGTTTTAA GGGGTAAGGA ACCTGATAGA 
ATTCCATGGT CTCCACTGGT AGGCCGTTAT TATGTAAATT CTTTAGAAGA ACAGGGGATT 
AAGCTTGAAG ATATTGCTCC CCGGGAAATG GCAAAAACAC CGGCTTTGAA AAGAGATGTT 
AATCTTTATG AAGTTGAAGT GGTAAGGCAT ATTGGTGCTG ATATCATGTA CAGACATGTA 
AATTCTTATA AACTACATTA TAAAAATTGT AAGCTCATAA ATGAAACCAG AAATGGAGTA 
AGGTATGAAG GTTTTGAAAC CCCGGTTGGC AAAATATATT CAGAGCATAA AAAGAGTGGA 
GGAACGGAGT TTATCTCTAA ACACCTGTTA GAAAATAAAA AAGATATAGA GGTTTTAACA 
TATGTTTTTA GAAATGCAGT TGTAGAACCG GATTACCAGG ATTTTTATGA ATTTGATGAA 
CATATCGGAG ATGATGGTAT TGCCACCCTC ACTGGCCCCT TGACTCCAAT TCAGTTGATG 
CTTCAGTTTT ATGTAGGTGT TGCCAACACA ACCTATTTTT TAATGGATTA TAAGGATGAG 
ATGGAAAATT TATTTAGTGA AATTCATAAT TTGAATAGAG ATATTTACAG GGTGATGGCA 
GAATCTCCTG CTGAAGTAAT TATAACCTAT GAAGATACCT CAACCACTGT TTTAAGTCCT 
GCCTGGTATG AACAGTATTG CAAAAAAGAG CTGGATGAGT ATGCAGATAT TATTCATGAT 
TATAATAAAA TATTTATTAC CCATATGTGT GGTAAGTTAT CACTACTGAC AGATACACTG 
GCTGAAGGAA AGATGGATGG TATCGATTCT GTATGTCCTC CAACCACCGG AGATCTGGAA 
CCCGGTGATG CCCTTGAAGA GACAGGGAAA ATAATTATAG GTGGACTTGA ACCTGCTGCC 
CTGGTTAGAA TGAATGTTGA AGAGACGAGG GAATATACTC TGGAAAAGTT AAAACAGGTA 
GGAACCGGCC GTAATTTTAT TTTATCAACC GGTGATTCTA CTGCTTATGG AACACCCTTA 
GAAAATTTAA AAGCCATTAC CAGGGTAATA AAAGAATATG GACAATTTCC ATTAAATTTA 
TAA
 
Protein sequence
MGMTSRERIM AVLRGKEPDR IPWSPLVGRY YVNSLEEQGI KLEDIAPREM AKTPALKRDV 
NLYEVEVVRH IGADIMYRHV NSYKLHYKNC KLINETRNGV RYEGFETPVG KIYSEHKKSG 
GTEFISKHLL ENKKDIEVLT YVFRNAVVEP DYQDFYEFDE HIGDDGIATL TGPLTPIQLM 
LQFYVGVANT TYFLMDYKDE MENLFSEIHN LNRDIYRVMA ESPAEVIITY EDTSTTVLSP 
AWYEQYCKKE LDEYADIIHD YNKIFITHMC GKLSLLTDTL AEGKMDGIDS VCPPTTGDLE 
PGDALEETGK IIIGGLEPAA LVRMNVEETR EYTLEKLKQV GTGRNFILST GDSTAYGTPL 
ENLKAITRVI KEYGQFPLNL