| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_3376 |
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| Symbol | rho |
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| ID | 7311939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium cellulolyticum H10 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011898 |
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| Strand | - |
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| Start bp | 3913774 |
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| End bp | 3915846 |
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| Gene Length | 2073 bp |
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| Protein Length | 690 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643610279 |
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| Product | transcription termination factor Rho |
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| Protein accession | YP_002507645 |
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| Protein GI | 220930736 |
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| COG category | [K] Transcription |
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| COG ID | [COG1158] Transcription termination factor |
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| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000138614 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCAAA TTAATTTACA ATCAAAAACG TTAGAAGATT TGAGATATAT TGCAAAGATG
CTTGGGATTA AAAGTATATC CAAATATAAG AAGAGTGAGT TGGTAAAATT GCTTAGCGAA
AACGCTGAAA AAATTAAAGC CGACAATATT GTGGAAACGG TTGTTTCTGA AGAACCTAAA
AAGGCTGAAC CAGCTGCTAA TACAATAGAT ACTCACGTAA GCGAAGAAAG GTCCAAAGAA
GCATCGGAGG AGATTCCTGT TTTAAGAAAA TCCCGAAGAG GAAGGCCGAG CAAGGCATCC
AAATTAATGG ACAAGCCGGA AAATAATGGT GTAGCAGATC CAATCACTAG TGTTCCAGTT
CAGGAAACAG TCATTCCAGG AAATAATCTA AATATCGTAC CTGAGCAAAA TGGCAAACCC
GATAGATTGT CTGACACATT AAGGCATCTG GAAACAAAGA ATATTGAGAA GAAGGCCCAT
GGCAGAGGTC GCAAAAAGGA TGTTCAACCT TCTATTGAAT CCCCAAATAC TGAAAATAAG
GCAGAAACCA ATACATCAGC AGTTTCAGCA GGGGCTACAG TGAATGATTC TATCGTTAAC
CTGCCTCAAA GGAAAAATGG CAGGGCAAAG CCGGAGCAAA CGGTAGAACA GCCAAAAAAC
GTTCCTGATG AGAAGATACC CGTTAAAGTT GAAAAGGATT CTAAACCTAA AATATACAAG
AAGGAAGAAC AACCAACAGC AAGGCAAGAT ACTAGGCAAT TGCATAGGCA AGTTAAACAG
CATACAAATA CAAACAACAA GTCTGACAAT GCACCCGAAC CTCAGCGTAT ACCGCTAAAT
CAGCAGCCAC AGCAGGTTCA GCCTCAACAA GTGGTGCCGC CCCAGTCTCA GGTTATTTCA
CCTCAAATTC AGCAGCCGCA AGGTAGTGAA AAAATTGAAA GTGATGACCC TGTAGAAGGA
GTTCTTGAAG TGTTACCAGA CGGATATGGT TTTTTAAGAA GTGAGAATTA TCTGTCCGGC
CCCAAAGATG TTTATGTTTC ACCTTCACAA ATAAGACGTT TTGGACTTAA AACAGGGGAT
AAGCTCAGAG GTAAAGGCAG AATTCCGAAA GAAGGCGAAA AATTTCAGGC ATTATTATAT
GTACAGTCCA TAAACGGGGA CACTCCTGAT GTTGCATCAA AGAGAGTAGC GTTTGAGTAC
TTAACGCCTA TATATCCTGA TAACAGAATT ACGCTCGAAA CTTCACCAAG GGAATTTTCA
ACCAGACTTA TAGATCTCAT AGCTCCAATC GGAAAAGGCC AGAGAGGAAT GATAGTATCT
CCCCCTAAAG CCGGTAAAAC AATACTTTTA AAGAAAATTG CAAACGCAAT TACAATCAAT
TACCCCGAAG CAGAGTTAAT AGTACTTCTT ATCGATGAAA GACCTGAAGA AGTAACCGAT
ATGCAGCGTT CTATAAAGGG AGAGGTTATA TATTCTACAT TTGACGAGGT TCCCGAACAC
CATATAAAGG TTGCCGAGAT GGTTCTGGAG AGAGCACAGC GTCTTGTTGA GCAAAAGAAG
GATGTTGTTA TTCTTCTGGA TAGTATAACA AGGCTGGCAA GGGCTTATAA CCTTACTATT
CCTCCGACAG GAAGAACTTT ATCCGGCGGT TTGGATCCGG GTGCGCTTCA TAAACCGAAA
AGATTTTTTG GAGCAGCAAG GAATATTGAA TACGGAGGCA GTTTGACAAT TATGGCCACC
GCTCTCATAG AAACAGGAAG CAGAATGGAT GATGTAATCT TTGAGGAATT CAAGGGAACC
GGTAACATGG AACTTCATCT GGATAGAAAG CTTTCTGAAA AGAGAATATT CCCTGCAATC
GATATTAATA AGTCGGGAAC CAGACGTGAG GAGCTTCTTC TTAGCCAAAA AGAGCTTGAG
AGCGTATGGG CTATAAGAAA AGCAATGAGT AATATGGGAA CAGCAGAGGT TACAGAGATT
TTAATTAACA AGCTAATGCA AACTAGAACA AACGAAGACT TTGTAAATAG TATAAAAATA
TCGTTTTTAG ATAAAAATTC TCAGGATAGA TAA
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| Protein sequence | MDQINLQSKT LEDLRYIAKM LGIKSISKYK KSELVKLLSE NAEKIKADNI VETVVSEEPK
KAEPAANTID THVSEERSKE ASEEIPVLRK SRRGRPSKAS KLMDKPENNG VADPITSVPV
QETVIPGNNL NIVPEQNGKP DRLSDTLRHL ETKNIEKKAH GRGRKKDVQP SIESPNTENK
AETNTSAVSA GATVNDSIVN LPQRKNGRAK PEQTVEQPKN VPDEKIPVKV EKDSKPKIYK
KEEQPTARQD TRQLHRQVKQ HTNTNNKSDN APEPQRIPLN QQPQQVQPQQ VVPPQSQVIS
PQIQQPQGSE KIESDDPVEG VLEVLPDGYG FLRSENYLSG PKDVYVSPSQ IRRFGLKTGD
KLRGKGRIPK EGEKFQALLY VQSINGDTPD VASKRVAFEY LTPIYPDNRI TLETSPREFS
TRLIDLIAPI GKGQRGMIVS PPKAGKTILL KKIANAITIN YPEAELIVLL IDERPEEVTD
MQRSIKGEVI YSTFDEVPEH HIKVAEMVLE RAQRLVEQKK DVVILLDSIT RLARAYNLTI
PPTGRTLSGG LDPGALHKPK RFFGAARNIE YGGSLTIMAT ALIETGSRMD DVIFEEFKGT
GNMELHLDRK LSEKRIFPAI DINKSGTRRE ELLLSQKELE SVWAIRKAMS NMGTAEVTEI
LINKLMQTRT NEDFVNSIKI SFLDKNSQDR
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