| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_2505 |
|---|
| Symbol | |
|---|
| ID | 7311168 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | - |
|---|
| Start bp | 3027052 |
|---|
| End bp | 3028884 |
|---|
| Gene Length | 1833 bp |
|---|
| Protein Length | 610 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 643609434 |
|---|
| Product | diguanylate cyclase and metal dependent phosphohydrolase |
|---|
| Protein accession | YP_002506813 |
|---|
| Protein GI | 220929904 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain
[COG2206] HD-GYP domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACGAGG ATAATGCACA GTTCAATGTT GCTTCTTCAA TAGAGAAAGG CATTGAACTG
CTAATGGAAC TAAATCAGGA ATATGCAAAC CTTACTTTCA AGGTAAAAAG TCTCGAAAAC
AGACTTGCTG CGGTATCTGT ACTGATAGAC ATTAATGAGT ATATGGGGAA CATCCTGCAT
TTTCAGGATC TCGTAAGCTA TTTAAAGGAT GTAATAGCAG GGGTTCTTGG TTTGGATTGT
ACGATATACA CTCCTGATGA TATTGCAAAG ATGAAAATGG ATCCTTCATT TCTGCCCAAT
ACTGATTTAT ATATACAGAA CTTGAAGGCA CAGGGGAAGG AATTATTCGG ATACAACTCC
GGCTCACTTG GTGTACTGTG TATTTCCAAA CGTGATTTGT ATGGTTATCT TGTTATCCAC
CATGAATTGG TTGACATGAT TGATGAGGAA AAGAAGGGTT TACTTCAGCT AATTAAAGGC
CAGATTTGTA TATACTTTGA AAATGCAATG CTTTTTTCAA AACTTAGAGA TTCAGCAGAA
CATGATGGAT TGACAGGTCT TTATAACAGA CTTTATCTTT CACAACTTCT GGATAACTGG
GAAGAAAGTA TGGTTGGGAT AAATGGTGCA ATAATACTTG ATTTGGACAA TTTCAAGAAT
ATAAATGACA CTTATGGACA CCTGGCAGGT GATAATGTTA TCAGGATGTT GGTAGGTGTT
ATTAAAAATG CCATAAATAA TCTCCCTGTG TATGCTATAC GATATGGTGG TGAAGAATTT
CTTCTGCTTA CAAAAGGGAT TGGCTCCAAG GAAATTGTGG AGATAGCTGA AACAATCCGC
AGAGAGTTTA ATACTTTAAA ATATGAGGAA AGCAGTCTCA GCGTTAGTCT AGGAGTGTCA
GTTCTGGGTG AATCCTGCAA GGTAATAGAC TATATGGAGC TTATCAGAAG TGCTGATGAT
GCACTGTATA CGGCAAAGAG AATTGGCAAA AATGTGGTGG TTACTTCGGA TGAAGACCTT
CAGCTATTTG AATCAGTTTC ATTTAACATT GCAAAGAATC TATCAAGATA TAACAGATTC
AATGTTATTG GAGAAATTTA CAGAGTCAAT TTTAAAGCAA ACCGTTTACT ATCAATAGAG
GAGTACAGCA AGCTAAAATA CTGTATTACA TCATGTTTCA GAGAATACGA CGGCATTTAT
GGCTCAGTTT CTTTATCATT CGTGATTTTG ACTGATAACC AGATTCCACA AAATCTTATG
GAGCAGAAAA TCCGTGAGGC GTTGGTAAGC AATGGACTTG ATTATGTTAA CTTCGAAGTT
TATTCAAATA CTGATGCCTA TAGGGAGGTT ATGCTTCACA GTAAGAGAGT TGCCGCTATC
AGTATGGCAC TGGCAGAGGC TTACGGCCTT CCGGCGGATG AATGTGAAAA GGTGAGGCTT
GCAGCTGCCA ACCACGATAT AGGAAAACTG TACGTTAATC CTAAAATTCT AAACAAACCC
GGCAAACTTA CACCAGAGGA ATACGAAAAA ATAAAAATGC ATGCGTTTTA CAGCTACCAG
TATGCTAAAA GCCGTGAAAA TCTTAAATTT GTTGCCGAAT ACATATTTTA TCACCATGAG
TATATAGATG GCTCAGGATA CTTTAAGAAA AAAGACCTTC CGCTCTATTC TCAAATTATA
GTGCTAGCAG ATATTTTTGA TGCACTTAGT GAAAACAGAT GCTATCGTGC AGCCTTCAGC
AAGGATGAAG CAATCCAGAT AATGGAGGGT GAAAAGCACA AATTCAATCC GGAACTATTT
GAATTATTGA AACAGATTGC AAATAATATT TAA
|
|---|
| Protein sequence | MYEDNAQFNV ASSIEKGIEL LMELNQEYAN LTFKVKSLEN RLAAVSVLID INEYMGNILH
FQDLVSYLKD VIAGVLGLDC TIYTPDDIAK MKMDPSFLPN TDLYIQNLKA QGKELFGYNS
GSLGVLCISK RDLYGYLVIH HELVDMIDEE KKGLLQLIKG QICIYFENAM LFSKLRDSAE
HDGLTGLYNR LYLSQLLDNW EESMVGINGA IILDLDNFKN INDTYGHLAG DNVIRMLVGV
IKNAINNLPV YAIRYGGEEF LLLTKGIGSK EIVEIAETIR REFNTLKYEE SSLSVSLGVS
VLGESCKVID YMELIRSADD ALYTAKRIGK NVVVTSDEDL QLFESVSFNI AKNLSRYNRF
NVIGEIYRVN FKANRLLSIE EYSKLKYCIT SCFREYDGIY GSVSLSFVIL TDNQIPQNLM
EQKIREALVS NGLDYVNFEV YSNTDAYREV MLHSKRVAAI SMALAEAYGL PADECEKVRL
AAANHDIGKL YVNPKILNKP GKLTPEEYEK IKMHAFYSYQ YAKSRENLKF VAEYIFYHHE
YIDGSGYFKK KDLPLYSQII VLADIFDALS ENRCYRAAFS KDEAIQIMEG EKHKFNPELF
ELLKQIANNI
|
|---|
| |